LICENSE.md
MANIFEST.in
README.md
VERSION
setup.cfg
setup.py
src/pytpp/__init__.py
src/pytpp/__main__.py
src/pytpp/tpp_gui.py
src/pytpp/tpp_tools.py
src/pytpp/tpp_tools_regex.py
src/pytransit/__init__.py
src/pytransit/__main__.py
src/pytransit/draw_trash.py
src/pytransit/fileDisplay.py
src/pytransit/images.py
src/pytransit/norm_tools.py
src/pytransit/qcDisplay.py
src/pytransit/stat_tools.py
src/pytransit/tnseq_tools.py
src/pytransit/tnseq_tools_corrections.py
src/pytransit/transit_gui.py
src/pytransit/transit_tools.py
src/pytransit/trash.py
src/pytransit/view_trash.py
src/pytransit/analysis/__init__.py
src/pytransit/analysis/anova.py
src/pytransit/analysis/base.py
src/pytransit/analysis/binomial.py
src/pytransit/analysis/example.py
src/pytransit/analysis/gi.py
src/pytransit/analysis/griffin.py
src/pytransit/analysis/gumbel.py
src/pytransit/analysis/gumbel_mod.py
src/pytransit/analysis/gumbel_mod2.py
src/pytransit/analysis/gumbel_mod3.py
src/pytransit/analysis/gumbel_orig.py
src/pytransit/analysis/hmm.py
src/pytransit/analysis/norm.py
src/pytransit/analysis/normalize.py
src/pytransit/analysis/pathway_enrichment.py
src/pytransit/analysis/rankproduct.py
src/pytransit/analysis/resampling.py
src/pytransit/analysis/resampling_mod.py
src/pytransit/analysis/temp1.py
src/pytransit/analysis/tn5gaps.py
src/pytransit/analysis/tnseq_stats.py
src/pytransit/analysis/utest.py
src/pytransit/data/GO_associated_Rvs.csv
src/pytransit/data/H37Rv.sanger_associated_RVS.csv
src/pytransit/data/cholesterol_H37Rv_merged.wig
src/pytransit/data/cholesterol_H37Rv_rep1.wig
src/pytransit/data/cholesterol_H37Rv_rep2.wig
src/pytransit/data/cholesterol_H37Rv_rep3.wig
src/pytransit/data/cholesterol_glycerol_combined.dat
src/pytransit/data/glycerol_H37Rv_merged.wig
src/pytransit/data/glycerol_H37Rv_rep1.wig
src/pytransit/data/glycerol_H37Rv_rep2.wig
src/pytransit/data/samples_metadata_cg.txt
src/pytransit/doc/build/html/genindex.html
src/pytransit/doc/build/html/index.html
src/pytransit/doc/build/html/py-modindex.html
src/pytransit/doc/build/html/pytransit.analysis.html
src/pytransit/doc/build/html/pytransit.html
src/pytransit/doc/build/html/search.html
src/pytransit/doc/build/html/tpp.html
src/pytransit/doc/build/html/transit.html
src/pytransit/doc/build/html/transit_console_cheatsheet.html
src/pytransit/doc/build/html/transit_export_tutorial.html
src/pytransit/doc/build/html/transit_features.html
src/pytransit/doc/build/html/transit_install.html
src/pytransit/doc/build/html/transit_interactions_tutorial.html
src/pytransit/doc/build/html/transit_methods.html
src/pytransit/doc/build/html/transit_normalization_tutorial.html
src/pytransit/doc/build/html/transit_overview.html
src/pytransit/doc/build/html/transit_running.html
src/pytransit/doc/build/html/_images/TPP-screenshot.png
src/pytransit/doc/build/html/_images/transit_dataset_scatter_graph.png
src/pytransit/doc/build/html/_images/transit_dataset_track_view.png
src/pytransit/doc/build/html/_images/transit_export_options.png
src/pytransit/doc/build/html/_images/transit_interface.png
src/pytransit/doc/build/html/_images/transit_quality_control_histogram.png
src/pytransit/doc/build/html/_images/transit_quality_control_qqplot.png
src/pytransit/doc/build/html/_images/transit_quality_control_ranked.png
src/pytransit/doc/build/html/_images/transit_quality_control_window.png
src/pytransit/doc/build/html/_images/transit_resampling_histogram_graph.png
src/pytransit/doc/build/html/_images/transit_result_volcano_graph.png
src/pytransit/doc/build/html/_images/transit_tutorial_annotation.png
src/pytransit/doc/build/html/_images/transit_tutorial_control_datasets.png
src/pytransit/doc/build/html/_images/transit_tutorial_gi_control_A.png
src/pytransit/doc/build/html/_images/transit_tutorial_gi_control_B.png
src/pytransit/doc/build/html/_images/transit_tutorial_gi_experimental_A.png
src/pytransit/doc/build/html/_images/transit_tutorial_gi_experimental_B.png
src/pytransit/doc/build/html/_images/transit_tutorial_gi_method.png
src/pytransit/doc/build/html/_images/transit_tutorial_norm_options.png
src/pytransit/doc/build/html/_modules/functools.html
src/pytransit/doc/build/html/_modules/index.html
src/pytransit/doc/build/html/_modules/pytransit/draw_trash.html
src/pytransit/doc/build/html/_modules/pytransit/fileDisplay.html
src/pytransit/doc/build/html/_modules/pytransit/norm_tools.html
src/pytransit/doc/build/html/_modules/pytransit/qcDisplay.html
src/pytransit/doc/build/html/_modules/pytransit/stat_tools.html
src/pytransit/doc/build/html/_modules/pytransit/tnseq_tools.html
src/pytransit/doc/build/html/_modules/pytransit/transit_gui.html
src/pytransit/doc/build/html/_modules/pytransit/transit_tools.html
src/pytransit/doc/build/html/_modules/pytransit/trash.html
src/pytransit/doc/build/html/_modules/pytransit/view_trash.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/anova.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/base.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/binomial.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/example.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/griffin.html
src/pytransit/doc/build/html/_modules/pytransit/analysis/gumbel.html
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src/pytransit/doc/build/html/_modules/pytransit/analysis/rankproduct.html
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src/pytransit/doc/build/html/_static/fonts/Lato/lato-regular.woff2
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src/pytransit/doc/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2
src/pytransit/doc/build/html/_static/js/modernizr.min.js
src/pytransit/doc/build/html/_static/js/theme.js
src/pytransit/export/__init__.py
src/pytransit/export/base.py
src/pytransit/export/combined_wig.py
src/pytransit/export/igv.py
src/pytransit/export/mean_counts.py
src/pytransit/genomes/BCG.fna
src/pytransit/genomes/BCG.prot_table
src/pytransit/genomes/H37Rv.fna
src/pytransit/genomes/H37Rv.prot_table
src/pytransit/genomes/H37RvBD.fna
src/pytransit/genomes/H37RvBD.prot_table
src/pytransit/genomes/H37RvBD_mod3.prot_table
src/pytransit/genomes/H37RvMA2.fna
src/pytransit/genomes/H37RvMA2.prot_table
src/pytransit/genomes/genomes.html
src/pytransit/genomes/genomes.html~
src/pytransit/genomes/mc2_155_tamu.fna
src/pytransit/genomes/mc2_155_tamu.prot_table
tnseq_transit.egg-info/PKG-INFO
tnseq_transit.egg-info/SOURCES.txt
tnseq_transit.egg-info/dependency_links.txt
tnseq_transit.egg-info/entry_points.txt
tnseq_transit.egg-info/requires.txt
tnseq_transit.egg-info/top_level.txt