LICENSE.txt
MANIFEST.in
README.rst
requirements.txt
setup.py
tmtk/__init__.py
tmtk/options.py
tmtk/study.py
tmtk/version.py
tmtk.egg-info/PKG-INFO
tmtk.egg-info/SOURCES.txt
tmtk.egg-info/dependency_links.txt
tmtk.egg-info/entry_points.txt
tmtk.egg-info/requires.txt
tmtk.egg-info/top_level.txt
tmtk/annotation/AnnotationBase.py
tmtk/annotation/Annotations.py
tmtk/annotation/ChromosomalRegions.py
tmtk/annotation/MicroarrayAnnotation.py
tmtk/annotation/MirnaAnnotation.py
tmtk/annotation/ProteomicsAnnotation.py
tmtk/annotation/__init__.py
tmtk/arborist/__init__.py
tmtk/arborist/common.py
tmtk/arborist/connect_to_baas.py
tmtk/arborist/jstreecontrol.py
tmtk/arborist/jupyter_extension.py
tmtk/arborist/static/.DS_Store
tmtk/arborist/static/bootstrap-4.0.0a5.css
tmtk/arborist/static/bootstrap-4.0.0a5.js
tmtk/arborist/static/favicon.ico
tmtk/arborist/static/jquery-1.11.1.js
tmtk/arborist/static/jupyter_embedded.html
tmtk/arborist/static/mainstyle.css
tmtk/arborist/static/placeholder.js
tmtk/arborist/static/tether-1.2.0.js
tmtk/arborist/static/tree.js
tmtk/arborist/static/images/.DS_Store
tmtk/arborist/static/images/add_tag.png
tmtk/arborist/static/images/addfolder.png
tmtk/arborist/static/images/folder.png
tmtk/arborist/static/images/helpicon.jpg
tmtk/arborist/static/images/pin.png
tmtk/arborist/static/images/screenshot.png
tmtk/arborist/static/images/spin.svg
tmtk/arborist/static/images/message/error.png
tmtk/arborist/static/images/message/info.png
tmtk/arborist/static/images/message/warning.png
tmtk/arborist/static/images/tree/.DS_Store
tmtk/arborist/static/images/tree/alpha.gif
tmtk/arborist/static/images/tree/code.png
tmtk/arborist/static/images/tree/dna_icon.png
tmtk/arborist/static/images/tree/empty.png
tmtk/arborist/static/images/tree/folder.gif
tmtk/arborist/static/images/tree/green_info.png
tmtk/arborist/static/images/tree/numeric.gif
tmtk/arborist/static/images/tree/study.png
tmtk/arborist/static/images/tree/tag_icon.png
tmtk/arborist/static/jstree/.DS_Store
tmtk/arborist/static/jstree/dist/.DS_Store
tmtk/arborist/static/jstree/dist/jstree.js
tmtk/arborist/static/jstree/dist/jstree.min.js
tmtk/arborist/static/jstree/dist/themes/default/32px.png
tmtk/arborist/static/jstree/dist/themes/default/40px.png
tmtk/arborist/static/jstree/dist/themes/default/style.css
tmtk/arborist/static/jstree/dist/themes/default/style.min.css
tmtk/arborist/static/jstree/dist/themes/default/throbber.gif
tmtk/arborist/static/jstree/dist/themes/default-dark/32px.png
tmtk/arborist/static/jstree/dist/themes/default-dark/40px.png
tmtk/arborist/static/jstree/dist/themes/default-dark/style.css
tmtk/arborist/static/jstree/dist/themes/default-dark/style.min.css
tmtk/arborist/static/jstree/dist/themes/default-dark/throbber.gif
tmtk/arborist/static/templates/fair_study.metadata.json
tmtk/arborist/static/templates/trait_master_tree.template.json
tmtk/clinical/Clinical.py
tmtk/clinical/ColumnMapping.py
tmtk/clinical/DataFile.py
tmtk/clinical/Ontology.py
tmtk/clinical/Variable.py
tmtk/clinical/WordMapping.py
tmtk/clinical/__init__.py
tmtk/clinical/modifier.py
tmtk/clinical/trial_vists.py
tmtk/highdim/CopyNumberVariation.py
tmtk/highdim/Expression.py
tmtk/highdim/HighDim.py
tmtk/highdim/HighDimBase.py
tmtk/highdim/Mirna.py
tmtk/highdim/Proteomics.py
tmtk/highdim/ReadCounts.py
tmtk/highdim/SampleMapping.py
tmtk/highdim/__init__.py
tmtk/params/AnnotationParams.py
tmtk/params/ClinicalParams.py
tmtk/params/HighDimParams.py
tmtk/params/Params.py
tmtk/params/StudyParams.py
tmtk/params/TagsParams.py
tmtk/params/__init__.py
tmtk/params/base.py
tmtk/tags/Tags.py
tmtk/tags/__init__.py
tmtk/toolbox/__init__.py
tmtk/toolbox/generate_chromosomal_regions_file.py
tmtk/toolbox/random_study_generator.py
tmtk/toolbox/remap_chromosomal_regions.py
tmtk/toolbox/remap_id.py
tmtk/toolbox/wizard.py
tmtk/toolbox/skinny_loader/__init__.py
tmtk/toolbox/skinny_loader/export_to_skinny.py
tmtk/toolbox/skinny_loader/shared.py
tmtk/toolbox/skinny_loader/i2b2demodata/__init__.py
tmtk/toolbox/skinny_loader/i2b2demodata/concept_dimension.py
tmtk/toolbox/skinny_loader/i2b2demodata/modifier_dimension.py
tmtk/toolbox/skinny_loader/i2b2demodata/observation_fact.py
tmtk/toolbox/skinny_loader/i2b2demodata/patient_dimension.py
tmtk/toolbox/skinny_loader/i2b2demodata/patient_mapping.py
tmtk/toolbox/skinny_loader/i2b2demodata/study_table.py
tmtk/toolbox/skinny_loader/i2b2demodata/trial_visit_dimension.py
tmtk/toolbox/skinny_loader/i2b2metadata/__init__.py
tmtk/toolbox/skinny_loader/i2b2metadata/dimension_descriptions.py
tmtk/toolbox/skinny_loader/i2b2metadata/i2b2_secure.py
tmtk/toolbox/skinny_loader/i2b2metadata/i2b2_tags.py
tmtk/toolbox/skinny_loader/i2b2metadata/study_dimension_descriptions.py
tmtk/toolbox/template_reader/__init__.py
tmtk/toolbox/template_reader/create_study_from_templates.py
tmtk/toolbox/template_reader/sheet_exceptions.py
tmtk/toolbox/template_reader/sheets.py
tmtk/toolbox/template_reader_deprecated/__init__.py
tmtk/toolbox/template_reader_deprecated/interpret_templates.py
tmtk/toolbox/template_reader_deprecated/template_data.py
tmtk/toolbox/template_reader_deprecated/template_validation.py
tmtk/utils/Exceptions.py
tmtk/utils/Generic.py
tmtk/utils/__init__.py
tmtk/utils/cached_property.py
tmtk/utils/filebase.py
tmtk/utils/mappings.py
tmtk/utils/validate.py
tmtk/utils/batch/__init__.py
tmtk/utils/batch/__main__.py
tmtk/utils/batch/_job_descriptions.py
tmtk/utils/batch/_wrapper.py