README.rst
setup.py
tmtk/__init__.py
tmtk/study.py
tmtk.egg-info/PKG-INFO
tmtk.egg-info/SOURCES.txt
tmtk.egg-info/dependency_links.txt
tmtk.egg-info/requires.txt
tmtk.egg-info/top_level.txt
tmtk/annotation/AnnotationBase.py
tmtk/annotation/Annotations.py
tmtk/annotation/ChromosomalRegions.py
tmtk/annotation/MicroarrayAnnotation.py
tmtk/annotation/MirnaAnnotation.py
tmtk/annotation/ProteomicsAnnotation.py
tmtk/annotation/__init__.py
tmtk/arborist/__init__.py
tmtk/arborist/common.py
tmtk/arborist/connect_to_baas.py
tmtk/arborist/flask_connection.py
tmtk/arborist/jstreecontrol.py
tmtk/clinical/Clinical.py
tmtk/clinical/ColumnMapping.py
tmtk/clinical/DataFile.py
tmtk/clinical/Variable.py
tmtk/clinical/WordMapping.py
tmtk/clinical/__init__.py
tmtk/highdim/CopyNumberVariation.py
tmtk/highdim/Expression.py
tmtk/highdim/HighDim.py
tmtk/highdim/HighDimBase.py
tmtk/highdim/Mirna.py
tmtk/highdim/Proteomics.py
tmtk/highdim/ReadCounts.py
tmtk/highdim/SampleMapping.py
tmtk/highdim/__init__.py
tmtk/params/AnnotationParams.py
tmtk/params/ClinicalParams.py
tmtk/params/HighDimParams.py
tmtk/params/Params.py
tmtk/params/ParamsBase.py
tmtk/params/StudyParams.py
tmtk/params/TagsParams.py
tmtk/params/__init__.py
tmtk/tags/Tags.py
tmtk/tags/__init__.py
tmtk/toolbox/__init__.py
tmtk/toolbox/generate_chromosomal_regions_file.py
tmtk/toolbox/remap_chromosomal_regions.py
tmtk/toolbox/wizard.py
tmtk/utils/CPrint.py
tmtk/utils/Exceptions.py
tmtk/utils/Generic.py
tmtk/utils/HighDimUtils.py
tmtk/utils/__init__.py
tmtk/utils/filebase.py
tmtk/utils/mappings.py