.gitignore
.travis.yml
LICENSE
README.md
requirements.txt
setup.py
images/tmerge2 - splice predictor.png
images/tmerge2_basic.png
images/tmerge2_hooks.png
tmerge/__init__.py
tmerge.egg-info/PKG-INFO
tmerge.egg-info/SOURCES.txt
tmerge.egg-info/dependency_links.txt
tmerge.egg-info/entry_points.txt
tmerge.egg-info/requires.txt
tmerge.egg-info/top_level.txt
tmerge/cli/__init__.py
tmerge/merge/__init__.py
tmerge/merge/hook.py
tmerge/merge/merge.py
tmerge/merge/rules.py
tmerge/merge/rules_test.py
tmerge/models/__init__.py
tmerge/models/transcript_model.py
tmerge/output/__init__.py
tmerge/output/gtf.py
tmerge/parsers/__init__.py
tmerge/parsers/abstract_parser.py
tmerge/parsers/gtf.py
tmerge/parsers/importer.py
tmerge/plugins/__init__.py
tmerge/plugins/depth.py
tmerge/plugins/merged_info.py
tmerge/plugins/min_length.py
tmerge/plugins/read_support.py
tmerge/plugins/splice_site_scoring.py
tmerge/plugins/spliced_lengths.py
tmerge/plugins/stats.py
tmerge/utils/__init__.py
tmerge/utils/fakers.py
tmerge/utils/iterators.py
tmerge/utils/ranges.py
tmerge/utils/ranges_test.py