.gitignore
.travis.yml
LICENSE
README.md
requirements.txt
setup.py
cli/__init__.py
images/tmerge2 - splice predictor.png
images/tmerge2_basic.png
images/tmerge2_hooks.png
plugins/__init__.py
plugins/depth.py
plugins/merged_info.py
plugins/min_length.py
plugins/read_support.py
plugins/splice_site_scoring.py
plugins/spliced_lengths.py
plugins/stats.py
src/__init__.py
src/merge/__init__.py
src/merge/hook.py
src/merge/merge.py
src/merge/rules.py
src/merge/rules_test.py
src/models/__init__.py
src/models/transcript_model.py
src/output/__init__.py
src/output/gtf.py
src/parsers/__init__.py
src/parsers/abstract_parser.py
src/parsers/gtf.py
src/parsers/importer.py
src/utils/__init__.py
src/utils/fakers.py
src/utils/iterators.py
src/utils/ranges.py
src/utils/ranges_test.py
tmerge.egg-info/PKG-INFO
tmerge.egg-info/SOURCES.txt
tmerge.egg-info/dependency_links.txt
tmerge.egg-info/entry_points.txt
tmerge.egg-info/requires.txt
tmerge.egg-info/top_level.txt