AUTHORS.md
CONTRIBUTING.rst
HISTORY.md
LICENSE.md
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.md
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.md
docs/tia_logo.png
docs/usage.rst
docs/images/out_of_bounds_read.png
docs/images/read_bounds_tissue.png
docs/images/read_rect-interpolated-reads.png
docs/images/read_rect_tissue.png
docs/images/sub_pixel_reads.png
tests/__init__.py
tests/conftest.py
tests/test_exceptions.py
tests/test_patch_extraction.py
tests/test_save_tiles.py
tests/test_slide_info.py
tests/test_stainnorm.py
tests/test_tiatoolbox.py
tests/test_tissuemask.py
tests/test_utils.py
tests/test_wsimeta.py
tests/test_wsireader.py
tests/data/TCGA-HE-7130-01Z-00-DX1.png
tests/data/norm_macenko.png
tests/data/norm_reinhard.png
tests/data/norm_ruifrok.png
tests/data/norm_vahadane.png
tests/data/sample_patch_extraction-noheader.csv
tests/data/sample_patch_extraction.csv
tests/data/sample_patch_extraction.json
tests/data/sample_patch_extraction.npy
tests/data/sample_patch_extraction_2col.json
tests/data/sample_patch_extraction_2col.npy
tests/data/sample_patch_extraction_jp2.csv
tests/data/sample_patch_extraction_jp2read.npy
tests/data/sample_patch_extraction_read.npy
tests/data/sample_patch_extraction_svs.csv
tests/data/sample_patch_extraction_svs_header.csv
tests/data/sample_patch_extraction_svsread.npy
tests/data/source_image.png
tiatoolbox/__init__.py
tiatoolbox/__main__.py
tiatoolbox/cli.py
tiatoolbox/tiatoolbox.py
tiatoolbox.egg-info/PKG-INFO
tiatoolbox.egg-info/SOURCES.txt
tiatoolbox.egg-info/dependency_links.txt
tiatoolbox.egg-info/entry_points.txt
tiatoolbox.egg-info/not-zip-safe
tiatoolbox.egg-info/requires.txt
tiatoolbox.egg-info/top_level.txt
tiatoolbox/tools/__init__.py
tiatoolbox/tools/patchextraction.py
tiatoolbox/tools/stainextract.py
tiatoolbox/tools/stainnorm.py
tiatoolbox/tools/tissuemask.py
tiatoolbox/utils/__init__.py
tiatoolbox/utils/exceptions.py
tiatoolbox/utils/image.py
tiatoolbox/utils/misc.py
tiatoolbox/utils/transforms.py
tiatoolbox/wsicore/__init__.py
tiatoolbox/wsicore/save_tiles.py
tiatoolbox/wsicore/slide_info.py
tiatoolbox/wsicore/wsimeta.py
tiatoolbox/wsicore/wsireader.py