Metadata-Version: 2.1
Name: tiatoolbox
Version: 0.2.2
Summary: Computational pathology toolbox developed by TIA Lab.
Home-page: https://github.com/tialab/tiatoolbox
Author: TIA Lab
Author-email: tialab@dcs.warwick.ac.uk
License: UNKNOWN
Keywords: tiatoolbox
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Requires-Dist: Click (>=7.0)
Requires-Dist: numpy
Requires-Dist: pillow
Requires-Dist: matplotlib
Requires-Dist: setuptools (<=45.1.0)
Requires-Dist: opencv-python (>=4.0)
Requires-Dist: pathos (==0.2.5)
Requires-Dist: openslide-python (==1.1.1)
Requires-Dist: pyyaml

<p align="center">
  <img width="450" height="200" src="https://warwick.ac.uk/fac/sci/dcs/research/tia/tiatoolbox/files/tialab_logo.png">
</p>
<h1 align="center">TIA Toolbox</h1>
<p align="center">
  <a href="https://tia-toolbox.readthedocs.io/en/latest/?badge=latest">
    <img src="https://readthedocs.org/projects/tia-toolbox/badge/?version=latest" alt="Documentation Status" />
  </a>
  <a href="https://travis-ci.org/TIA-Lab/tiatoolbox">
    <img src="https://travis-ci.org/TIA-Lab/tiatoolbox.svg?branch=master" alt="Travis CI Status" />
  </a>
  <a href="https://badge.fury.io/py/tiatoolbox">
    <img src="https://badge.fury.io/py/tiatoolbox.svg" alt="PyPI Status" />
  </a>
</p>

Computational Pathology Toolbox developed by TIA Lab

Please try

    python -m tiatoolbox -h

Getting Started
===============

First, install OpenSlide [here](https://openslide.org/download/). Then,
create and activate the conda environment:

pip
---

    pip install -r requirements.txt

conda
-----

    conda env create --name tiatoolbox --file requirements.conda.yml
    conda activate tiatoolbox

tiatoolbox --help
=================

    usage: tiatoolbox [-h] [--version] [--verbose VERBOSE]
                     {slide_info}
                     ...

    positional arguments:
      {slide_info}
        slide_info          usage: python -m tiatoolbox slide_info -h

    optional arguments:
      -h, --help            show this help message and exit
      --version             show program`s version number and exit
      --verbose VERBOSE


History
=======

0.2.0 (2020-07-10)
------------------

### Major and Feature Improvements

-   Adds feature slide\_info to read whole slide images and display meta
    data information
-   Adds multiprocessing decorator TIAMultiProcess to allow running
    toolbox functions using multiprocessing.

### Changes to API

-   None

### Bug Fixes and Other Changes

-   Adds Sphinx Readthedocs support
    <https://readthedocs.org/projects/tia-toolbox/> for stable and
    develop branches
-   Adds code coverage tools to test the pytest coverage of the package
-   Adds deepsource integration to highlight and fix bug risks,
    performance issues etc.
-   Adds README to allow users to setup the environment.
-   Adds conda and pip requirements instructions


0.1.0 (2020-05-28)
------------------

-   First release on PyPI.



