.gitignore
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
.github/ISSUE_TEMPLATE/bug-report.yaml
.github/ISSUE_TEMPLATE/feature-request.yaml
.github/workflows/checks.yaml
.github/workflows/pr-priority-label.yaml
.github/workflows/release.yml
.github/workflows/stale.yaml
analysis/Precision oncology coding systems.xlsx
analysis/approval_status/Approval status brainstorming.ipynb
analysis/approval_status/Approval status comparisons.ipynb
analysis/approval_status/approval_heatmap.png
analysis/approval_status/approval_status_notes.md
analysis/external/DGIdb analysis.ipynb
analysis/external/GDCS analysis.ipynb
analysis/external/MOA analysis.ipynb
analysis/external/PharmGKB analysis.ipynb
analysis/external/civic.ipynb
analysis/sources/drugbank.ipynb
analysis/sources/drugsatfda.ipynb
analysis/sources/ncit.ipynb
src/thera_py.egg-info/PKG-INFO
src/thera_py.egg-info/SOURCES.txt
src/thera_py.egg-info/dependency_links.txt
src/thera_py.egg-info/entry_points.txt
src/thera_py.egg-info/requires.txt
src/thera_py.egg-info/top_level.txt
src/therapy/__init__.py
src/therapy/cli.py
src/therapy/log.py
src/therapy/main.py
src/therapy/query.py
src/therapy/schemas.py
src/therapy/database/__init__.py
src/therapy/database/database.py
src/therapy/database/dynamodb.py
src/therapy/etl/__init__.py
src/therapy/etl/base.py
src/therapy/etl/chembl.py
src/therapy/etl/chemidplus.py
src/therapy/etl/drugbank.py
src/therapy/etl/drugsatfda.py
src/therapy/etl/guidetopharmacology.py
src/therapy/etl/hemonc.py
src/therapy/etl/merge.py
src/therapy/etl/ncit.py
src/therapy/etl/rules.csv
src/therapy/etl/rules.py
src/therapy/etl/rxnorm.py
src/therapy/etl/wikidata.py
tests/conftest.py
tests/data/disease_normalization.json
tests/data/chembl/chembl_33.db
tests/data/chemidplus/chemidplus_2023-02-22.xml
tests/data/drugbank/drugbank_5.1.10.csv
tests/data/drugsatfda/drugsatfda_2023-11-15.json
tests/data/fixtures/chembl_fixtures.json
tests/data/fixtures/merged_fixtures.json
tests/data/fixtures/query_fixtures.json
tests/data/guidetopharmacology/gtop_ligand_id_mapping_2024.3.tsv
tests/data/guidetopharmacology/gtop_ligands_2024.3.tsv
tests/data/hemonc/hemonc_concepts_2024-03-01.csv
tests/data/hemonc/hemonc_rels_2024-03-01.csv
tests/data/hemonc/hemonc_synonyms_2024-03-01.csv
tests/data/ncit/ncit_23.09d.owl
tests/data/rxnorm/rxnorm_2023-11-06.RRF
tests/data/rxnorm/rxnorm_drug_forms_2023-11-06.yaml
tests/data/wikidata/wikidata_2023-11-17.json
tests/scripts/README.md
tests/scripts/build_chembl_data.py
tests/scripts/build_chemidplus_data.py
tests/scripts/build_disease_normalizer_data.py
tests/scripts/build_drugbank_data.py
tests/scripts/build_drugsatfda_data.py
tests/scripts/build_gtop_data.py
tests/scripts/build_hemonc_data.py
tests/scripts/build_ncit_data.py
tests/scripts/build_rxnorm_data.py
tests/scripts/build_wikidata_data.py
tests/scripts/dynamodb_run.sh
tests/unit/test_chembl.py
tests/unit/test_chemidplus.py
tests/unit/test_database.py
tests/unit/test_disease_indication.py
tests/unit/test_drugbank.py
tests/unit/test_drugsatfda.py
tests/unit/test_emit_warnings.py
tests/unit/test_guidetopharmacology.py
tests/unit/test_hemonc.py
tests/unit/test_merge.py
tests/unit/test_ncit.py
tests/unit/test_query.py
tests/unit/test_rxnorm.py
tests/unit/test_wikidata.py