LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
src/telomerehunter2/TVR_context.py
src/telomerehunter2/TVR_context_summary_tables.py
src/telomerehunter2/TVR_screen.py
src/telomerehunter2/__init__.py
src/telomerehunter2/estimate_telomere_content.py
src/telomerehunter2/fast_mode.py
src/telomerehunter2/filter_telomere_reads.py
src/telomerehunter2/get_repeat_threshold.py
src/telomerehunter2/get_summed_intratelomeric_read_length.py
src/telomerehunter2/merge_pdfs.py
src/telomerehunter2/normalize_TVR_counts.py
src/telomerehunter2/plot_functions.py
src/telomerehunter2/repeat_frequency_intratelomeric.py
src/telomerehunter2/sc_barcode_splitter_run.py
src/telomerehunter2/sort_telomere_reads.py
src/telomerehunter2/telomerehunter2_main.py
src/telomerehunter2/telomerehunter2_sc.py
src/telomerehunter2/utils.py
src/telomerehunter2.egg-info/PKG-INFO
src/telomerehunter2.egg-info/SOURCES.txt
src/telomerehunter2.egg-info/dependency_links.txt
src/telomerehunter2.egg-info/entry_points.txt
src/telomerehunter2.egg-info/requires.txt
src/telomerehunter2.egg-info/top_level.txt
src/telomerehunter2/cytoband_files/T2T_chm13v2.0_cytoBand.txt
src/telomerehunter2/cytoband_files/cytoBand_dog.txt
src/telomerehunter2/cytoband_files/hg19_cytoBand.txt
src/telomerehunter2/cytoband_files/hg38_cytoBand.txt
tests/test_telomerehunter2.py
tests/test_telomerehunter2_sc.py