MANIFEST.in
README.rst
setup.py
bin/telomerehunter
telomerehunter/__init__.py
telomerehunter/check_R_libraries.R
telomerehunter/estimate_telomere_content.py
telomerehunter/filter_telomere_reads.py
telomerehunter/functions_for_plots.R
telomerehunter/get_repeat_threshold.py
telomerehunter/hg19_cytoBand.txt
telomerehunter/plot_gc_content.R
telomerehunter/plot_gc_content_simple.R
telomerehunter/plot_repeat_frequency_intratelomeric.R
telomerehunter/plot_spectrum.R
telomerehunter/plot_spectrum_simple.R
telomerehunter/plot_spectrum_summary.R
telomerehunter/plot_spectrum_summary_simple.R
telomerehunter/plot_unmapped_summary.R
telomerehunter/plot_unmapped_summary_simple.R
telomerehunter/repeat_frequency_intratelomeric.py
telomerehunter/run_plot.sh
telomerehunter/sort_telomere_reads.py
telomerehunter.egg-info/PKG-INFO
telomerehunter.egg-info/SOURCES.txt
telomerehunter.egg-info/dependency_links.txt
telomerehunter.egg-info/not-zip-safe
telomerehunter.egg-info/requires.txt
telomerehunter.egg-info/top_level.txt
testdata/config.ini
testdata/config.ini~
testdata/tumor_MB1_chr1_first_band.bam
testdata/tumor_MB1_chr1_first_band.bam.bai