COPYING
README.md
pyproject.toml
setup.cfg
src/tb_variant_filter/__init__.py
src/tb_variant_filter/bed_to_regions_cli.py
src/tb_variant_filter/cli.py
src/tb_variant_filter/region_list.py
src/tb_variant_filter/regions_to_bed.py
src/tb_variant_filter.egg-info/PKG-INFO
src/tb_variant_filter.egg-info/SOURCES.txt
src/tb_variant_filter.egg-info/dependency_links.txt
src/tb_variant_filter.egg-info/entry_points.txt
src/tb_variant_filter.egg-info/requires.txt
src/tb_variant_filter.egg-info/top_level.txt
src/tb_variant_filter/filters/__init__.py
src/tb_variant_filter/filters/alt_percentage_filter.py
src/tb_variant_filter/filters/close_to_indel_filter.py
src/tb_variant_filter/filters/min_depth_filter.py
src/tb_variant_filter/filters/region_filter.py
src/tb_variant_filter/filters/snv_only_filter.py
src/tb_variant_filter/masks/__init__.py
src/tb_variant_filter/masks/farhat_rlc.py
src/tb_variant_filter/masks/farhat_rlc_lowmap.py
src/tb_variant_filter/masks/mtbseq.py
src/tb_variant_filter/masks/pe_ppe.py
src/tb_variant_filter/masks/tbprofiler.py
src/tb_variant_filter/masks/uvp.py
src/tests/__init__.py
src/tests/test_alt_percentage_filter.py
src/tests/test_close_to_indel_filter.py
src/tests/test_farhat_rlc.py
src/tests/test_farhat_rlc_lowmap.py
src/tests/test_min_depth_filter.py
src/tests/test_mtbseq.py
src/tests/test_multiple_ann_records.py
src/tests/test_pe_ppe.py
src/tests/test_region_filter.py
src/tests/test_region_list.py
src/tests/test_snv_filter.py
src/tests/test_tbprofiler.py
src/tests/test_uvp.py
src/tests/utils.py