HISTORY.md
LICENSE.txt
MANIFEST.in
README.md
VERSION.txt
requirements.txt
setup.py
GeneAnnotation/__init__.py
GeneAnnotation/annotate_bed.py
GeneAnnotation/generate_ensembl_data.py
GeneAnnotation/generate_refseq_data.py
Utils/__init__.py
Utils/bam_utils.py
Utils/bed_utils.py
Utils/call_process.py
Utils/config.py
Utils/create_oncoprints.py
Utils/file_utils.py
Utils/gtf.py
Utils/logger.py
Utils/parallel.py
Utils/proc_args.py
Utils/sambamba.py
Utils/utils.py
Utils/bedtools/__init__.py
Utils/reference_data/__init__.py
Utils/reporting/__init__.py
Utils/reporting/reporting.py
Utils/tools/__init__.py
Utils/tools/bed_file_from_gene_list.py
Utils/tools/bedcoverage_hist.py
Utils/tools/convert_build_whole_dir.py
Utils/tools/find_ave_cov_for_regions.py
Utils/tools/get_chr_lengths.py
Utils/tools/group_and_merge_by_gene.py
Utils/tools/make_cbio_genes.py
Utils/tools/sambamba.py
Utils/tools/sort_bed.py
Utils/tools/split_bed.py
Utils/tools/standardize_bed.py
Utils/tools/converters/__init__.py
Utils/tools/converters/fm_txt2bed.py
Utils/tools/converters/mastr_txt2bed.py
Utils/tools/converters/qiagen_txt2bed.py
scripts/targqc
targqc/Target.py
targqc/__init__.py
targqc/config.py
targqc/fastq.py
targqc/general_report.py
targqc/prep_bed.py
targqc/region_coverage.py
targqc/summarize.py
targqc/version.py
targqc.egg-info/PKG-INFO
targqc.egg-info/SOURCES.txt
targqc.egg-info/dependency_links.txt
targqc.egg-info/not-zip-safe
targqc.egg-info/requires.txt
targqc.egg-info/top_level.txt
targqc/bedops/__init__.py
targqc/picard/__init__.py
targqc/qualimap/__init__.py
targqc/qualimap/report_parser.py
targqc/qualimap/runner.py