README
setup.cfg
setup.py
scripts/taggd_demultiplex.py
taggd/__init__.py
taggd.egg-info/PKG-INFO
taggd.egg-info/SOURCES.txt
taggd.egg-info/dependency_links.txt
taggd.egg-info/requires.txt
taggd.egg-info/top_level.txt
taggd/core/__init__.py
taggd/core/demultiplex.py
taggd/core/demultiplex_core_functions.c
taggd/core/demultiplex_core_functions.pxd
taggd/core/demultiplex_core_functions.pyx
taggd/core/demultiplex_record_functions.c
taggd/core/demultiplex_record_functions.pxd
taggd/core/demultiplex_record_functions.pyx
taggd/core/demultiplex_search_functions.c
taggd/core/demultiplex_search_functions.pxd
taggd/core/demultiplex_search_functions.pyx
taggd/core/match.c
taggd/core/match.pxd
taggd/core/match.pyx
taggd/core/match_type.c
taggd/core/match_type.pxd
taggd/core/match_type.pyx
taggd/io/__init__.py
taggd/io/barcode_utils.c
taggd/io/barcode_utils.pxd
taggd/io/barcode_utils.pyx
taggd/io/fasta_record.c
taggd/io/fasta_record.pyx
taggd/io/fastq_record.c
taggd/io/fastq_record.pyx
taggd/io/fastq_utils.c
taggd/io/fastq_utils.pyx
taggd/io/phred_utils.c
taggd/io/phred_utils.pxd
taggd/io/phred_utils.pyx
taggd/io/reads_reader_writer.c
taggd/io/reads_reader_writer.pyx
taggd/io/record.c
taggd/io/record.pyx
taggd/io/sam_record.c
taggd/io/sam_record.pyx
taggd/misc/__init__.py
taggd/misc/counter.c
taggd/misc/counter.pyx
taggd/misc/distance_metrics.c
taggd/misc/distance_metrics.pxd
taggd/misc/distance_metrics.pyx
taggd/misc/kmer_utils.c
taggd/misc/kmer_utils.pxd
taggd/misc/kmer_utils.pyx