README.md
setup.py
sweep/__init__.py
sweep/calc_proj_mat_size.py
sweep/default_proj_mat_ope.py
sweep/fas2sweep.py
sweep/is_orthonormal.py
sweep/orthbase.py
sweep.egg-info/PKG-INFO
sweep.egg-info/SOURCES.txt
sweep.egg-info/dependency_links.txt
sweep.egg-info/not-zip-safe
sweep.egg-info/requires.txt
sweep.egg-info/top_level.txt
sweep/sweep_support/__init__.py
sweep/sweep_support/aa2idx.py
sweep/sweep_support/aa2int.py
sweep/sweep_support/generate_chunk.py
sweep/sweep_support/ij2inds.py
sweep/sweep_support/mask2vec_bin.py
sweep/sweep_support/mask2vec_count.py
sweep/sweep_support/nt2int.py
sweep/sweep_support/orth.py
sweep/sweep_support/seq2list.py
sweep/utilities/__init__.py
sweep/utilities/fasta_tools.py
sweep/utilities/tree_tools.py