NEWS
README
TODO.rst
setup.cfg
setup.py
Sunflower.egg-info/PKG-INFO
Sunflower.egg-info/SOURCES.txt
Sunflower.egg-info/dependency_links.txt
Sunflower.egg-info/entry_points.txt
Sunflower.egg-info/not-zip-safe
Sunflower.egg-info/requires.txt
Sunflower.egg-info/top_level.txt
data/build_data.sh
data/fastacomp.c
data/make_species_info.py
data/split_tfs.sql
data/sunflower.sql
doc/FAQ.rst
doc/Makefile
doc/RELEASE.rst
doc/conf.py
doc/index.rst
doc/make.bat
doc/sunflower.rst
ez_setup/README.txt
ez_setup/__init__.py
src/_fwd_bwd.c
src/_fwd_bwd.pyx
src/c_numpy.pxd
src/fwd_bwd.c
src/fwd_bwd.h
src/fwd_bwd.pxd
src/logmath.h
sunflower/__init__.py
sunflower/_optparse.py
sunflower/_poly.py
sunflower/_utils.py
sunflower/coop.py
sunflower/factorizers.py
sunflower/h5attr.py
sunflower/h5cat.py
sunflower/hdf5.py
sunflower/hmm.py
sunflower/priors.py
sunflower/pwm2sfl.py
sunflower/recompose.py
sunflower/report.py
sunflower/simulator.py
sunflower/split.py
sunflower/data/__init__.py
sunflower/data/species.pck
sunflower/data/jaspar/__init__.py
sunflower/data/jaspar/core/__init__.py
sunflower/data/jaspar/core/insect.sfl
sunflower/data/jaspar/core/plant.sfl
sunflower/data/jaspar/core/vertebrate.sfl
sunflower/driver/__init__.py
sunflower/driver/hdf5.py
sunflower/driver/sql.py
sunflower/driver/tabdelim.py
test/data/brca_tss.fna
test/data/short.fna
test/data/matrix.short/matrix_list.txt
test/data/matrix.short/short.pfm
test/data/matrix.simple/matrix_list.txt
test/data/matrix.simple/simple.pfm