torch>=2.0.0
distributed>=2023.10.0
numpy>=1.21.0
pandas>=1.3.0
scipy>=1.7.0
matplotlib>=3.4.0
seaborn>=0.11.0
tqdm>=4.61.0
torchvision>=0.10.0
lightning>=1.9.0
torchmetrics>=0.5.0
zarr<3.0.0,>=2.6.1
anndata<0.11.0,>=0.9.0
scanpy>=1.9.3
squidpy>=1.2.0
adjustText>=0.8
scikit-learn>=0.24.0
geopandas<1.0,>=0.9.0
shapely>=1.7.0
path>=17.0.0
pyarrow>=16.1.0
dask>=2023.10.0
dask_geopandas>=0.4.0
torch-geometric>=2.3.0
pqdm>=0.2.0
rtree>=1.3.0

[cuda11]
cudf-cu11
cuml-cu11
cugraph-cu11
cuspatial-cu11
cupy-cuda11x

[cuda12]
cudf-cu12
cuml-cu12
cugraph-cu12
cuspatial-cu12
cupy-cuda12x

[dev]
pytest
black
flake8
pre-commit
twine>=4.0.2

[tests]
pytest
coverage
