dask>=2023.3.2
bokeh==2.4.3
imageio==2.31.1
numpy==1.23.5
matplotlib==3.7.4
pandas>=1.5.3
scipy==1.10.1
seaborn==0.12.2
h5py>=3.7.0
gefpy>=1.1.1
# setuptools>=41.0.0,<60.0.0
setuptools>=61.0.0
#todo python3.8/site-packages/umap/distances.py:1053: NumbaDeprecationWarning: The 'nopython' keyword argument was not supplied to the 'numba.jit' decorator.
#The implicit default value for this argument is currently False, but it will be changed to True in Numba 0.59.0.
#See https://numba.readthedocs.io/en/stable/reference/deprecation.html#deprecation-of-object-mode-fall-back-behaviour-when-using-jit for details.
numba==0.56.4
statsmodels>=0.14.0
leidenalg>=0.10.1
umap-learn==0.5.1
KDEpy==1.1.0
# Jinja2==3.0.3
shapely>=2.0.0
# pyviz-comms==2.2.1
packaging>=23.1
panel==0.14.4
holoviews==1.17.1
param==1.13.0
hvplot>=0.9.0
# colorcet==2.0.6
datashader>=0.15.2
anndata>=0.7.5
phenograph==1.5.7
requests>=2.31.0
urllib3==2.1.0
typing-extensions>=4.7.1
natsort~=7.1.1
joblib>=1.3.2
patsy~=0.5.1
louvain>=0.8.0
# igraph==0.9.11
arboreto==0.1.6
squidpy==1.2.2
xarray==0.20.1

# segmentation
# albumentations==0.4.6
# glog==0.3.1
slideio>=1.0.0
# torchvision==0.11.1
tqdm>=4.60.0
scikit-learn>=1.3.0
pillow>=10.1.0
#opencv-python==4.5.1.48
scikit-image>=0.21.0
tifffile>=2023.2.3
# torch==1.10.0
opencv-python>=4.8.0.76
# tensorflow==2.7.0
# tensorflow-io-gcs-filesystem==0.24.0
# protobuf<3.21.0a0,>=3.20.1
protobuf>=3.20.1
hotspotsc==1.1.1
# git+https://github.com/YosefLab/Hotspot.git
distributed>=2023.3.2.1
keras==2.7.0
pyarrow>=10.0.1
tables>=3.6.1
spatialpandas>=0.4.4
# selenium>=4.4.3
loompy==3.0.7
gtfparse==1.2.1
harmonypy==0.0.6
SQLAlchemy==1.3.24
fbpca>=1.0
geosketch>=1.2
pyscenic>=0.12.1
onnxruntime==1.15.1
POT==0.8.1.0
distinctipy>=1.2.2
joypy>=0.2.6
lxml>=4.8.0
fastcluster>=1.2.6
pycirclize>=0.5.0
plotly>=5.15.0
cusingler
cell-bin==1.2.8.1