.gitignore
.readthedocs.yml
LICENSE
README.md
requirements.txt
setup.py
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/source/conf.py
docs/source/index.rst
docs/source/General/Installation.rst
docs/source/Tutorials/Examples.rst
docs/source/Tutorials/quick_start.ipynb
docs/source/_static/degs.png
docs/source/_static/heatmap.png
docs/source/_static/schema.png
docs/source/_static/spatial_cluster.png
docs/source/_static/spatial_distribution.png
docs/source/_static/stereopy.PNG
docs/source/_static/violin_distribution.png
docs/source/api/index.rst
docs/source/api/stereo.io.read_10x_data.rst
docs/source/api/stereo.io.read_stereo_data.rst
docs/source/api/stereo.plots.plot_dim_reduce.rst
docs/source/api/stereo.plots.plot_genes_count.rst
docs/source/api/stereo.plots.plot_heatmap_marker_genes.rst
docs/source/api/stereo.plots.plot_marker_genes.rst
docs/source/api/stereo.plots.plot_scatter.rst
docs/source/api/stereo.plots.plot_spatial_cluster.rst
docs/source/api/stereo.plots.plot_spatial_distribution.rst
docs/source/api/stereo.plots.plot_violin_distribution.rst
docs/source/api/stereo.preprocess.Normalizer.rst
docs/source/api/stereo.preprocess.cal_qc.rst
docs/source/api/stereo.preprocess.filter_cells.rst
docs/source/api/stereo.preprocess.filter_coordinates.rst
docs/source/api/stereo.preprocess.filter_genes.rst
docs/source/api/stereo.preprocess.normalize_total.rst
docs/source/api/stereo.preprocess.quantile_norm.rst
docs/source/api/stereo.preprocess.zscore_disksmooth.rst
docs/source/api/stereo.tools.CellTypeAnno.rst
docs/source/api/stereo.tools.Clustering.rst
docs/source/api/stereo.tools.DimReduce.rst
docs/source/api/stereo.tools.FindMarker.rst
docs/source/api/stereo.tools.SpatialLag.rst
docs/source/api/stereo.tools.SpatialPatternScore.rst
docs/source/api/stereo.tools.factor_analysis.rst
docs/source/api/stereo.tools.low_variance.rst
docs/source/api/stereo.tools.pca.rst
docs/source/api/stereo.tools.t_sne.rst
docs/source/api/stereo.tools.u_map.rst
stereo/__init__.py
stereo/config.py
stereo/log_manager.py
stereo/core/__init__.py
stereo/core/stereo_data.py
stereo/core/stereo_result.py
stereo/core/tool_base.py
stereo/io/__init__.py
stereo/io/reader.py
stereo/plots/__init__.py
stereo/plots/_params_doc.py
stereo/plots/clustering.py
stereo/plots/dim_reduce.py
stereo/plots/marker_genes.py
stereo/plots/plot_utils.py
stereo/plots/qc.py
stereo/plots/scatter.py
stereo/plots/_plot_basic/__init__.py
stereo/plots/_plot_basic/get_stereo_data.py
stereo/plots/_plot_basic/heatmap_plt.py
stereo/plots/_plot_basic/scatter_plt.py
stereo/preprocess/__init__.py
stereo/preprocess/filter.py
stereo/preprocess/normalize.py
stereo/preprocess/qc.py
stereo/preprocess/sc_transform.py
stereo/tools/__init__.py
stereo/tools/cell_type_anno.py
stereo/tools/clustering.py
stereo/tools/dim_reduce.py
stereo/tools/find_markers.py
stereo/tools/neighbors.py
stereo/tools/spatial_lag.py
stereo/tools/spatial_pattern_score.py
stereo/utils/__init__.py
stereo/utils/correlation.py
stereo/utils/data_helper.py
stereopy.egg-info/PKG-INFO
stereopy.egg-info/SOURCES.txt
stereopy.egg-info/dependency_links.txt
stereopy.egg-info/requires.txt
stereopy.egg-info/top_level.txt
tests/test_cell_type_anno.py
tests/test_clustering.py
tests/test_data_helper.py
tests/test_dim_reduce.py
tests/test_find_markers.py
tests/test_normalize.py
tests/test_spatial_lag.py
tests/test_spatial_pattern.py