Metadata-Version: 2.1
Name: stereo2xenium
Version: 0.1.0
Summary: Convert Stereo-seq data to 10X Genomics Xenium format.
Author-email: Xiaosu Li <xiao00su@gmail.com>
License: MIT
Project-URL: Homepage, https://github.com/xiao00su/Stereo2Xenium
Project-URL: Issues, https://github.com/xiao00su/Stereo2Xenium/issues
Project-URL: Documentation, https://github.com/xiao00su/Stereo2Xenium#readme
Keywords: spatial-transcriptomics,stereo-seq,Xenium,single-cell,data-conversion
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: OS Independent
Requires-Python: >=3.8
Description-Content-Type: text/markdown
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: pyarrow
Requires-Dist: h5py
Requires-Dist: scipy

## install



```
conda activate 
pip install Stereo2Xenium
```

## usage

```bash
inDir="/media/dell/data2/Stereo/eyeball/outs/feature_expression"
outDir="/media/dell/data2/Stereo/eyeball/toXenium"
stereo2xenium convert --input ${inDir} --output ${outDir} --sample C04687E314 --genome GRCm39 --cellbin-gem
stereo2xenium viewH5 --h5file ${inDir}/C04687E314.adjusted.cellbin.gef
```

