AUTHORS.md
CHANGELOG.md
CONTRIBUTING.md
CONTRIBUTORS.md
LICENSE
MANIFEST.in
README.md
conftest.py
mkdocs.yml
pyproject.toml
requirements.txt
requirements_deepcell-gpu.txt
requirements_deepcell.txt
requirements_devel.txt
requirements_docs.txt
requirements_test.txt
setup.cfg
setup.py
docs/authors.md
docs/changelog.md
docs/contributing.md
docs/contributors.md
docs/directories.md
docs/file-types.md
docs/index.md
docs/install-docker.md
docs/install-python.md
docs/license.md
docs/mkdocstrings.css
docs/cli/apps.md
docs/cli/classification.md
docs/cli/export.md
docs/cli/intro.md
docs/cli/measurement.md
docs/cli/preprocessing.md
docs/cli/segmentation.md
docs/cli/utils.md
docs/img/steinbock-favicon.png
docs/img/steinbock-logo-white.png
docs/img/steinbock-logo.png
docs/python/intro.md
docs/python/api/steinbock.classification.md
docs/python/api/steinbock.export.md
docs/python/api/steinbock.io.md
docs/python/api/steinbock.measurement.md
docs/python/api/steinbock.preprocessing.md
docs/python/api/steinbock.segmentation.md
docs/python/api/steinbock.utils.md
steinbock/__init__.py
steinbock/__main__.py
steinbock/_env.py
steinbock/_steinbock.py
steinbock/_version.py
steinbock/io.py
steinbock.egg-info/PKG-INFO
steinbock.egg-info/SOURCES.txt
steinbock.egg-info/dependency_links.txt
steinbock.egg-info/entry_points.txt
steinbock.egg-info/requires.txt
steinbock.egg-info/top_level.txt
steinbock.egg-info/zip-safe
steinbock/_cli/__init__.py
steinbock/_cli/_cli.py
steinbock/_cli/apps.py
steinbock/_cli/utils.py
steinbock/classification/__init__.py
steinbock/classification/_classification.py
steinbock/classification/_cli/__init__.py
steinbock/classification/_cli/_cli.py
steinbock/classification/_cli/ilastik.py
steinbock/classification/ilastik/__init__.py
steinbock/classification/ilastik/_ilastik.py
steinbock/classification/ilastik/data/__init__.py
steinbock/classification/ilastik/data/pixel_classifier.ilp
steinbock/export/__init__.py
steinbock/export/data.py
steinbock/export/graphs.py
steinbock/export/_cli/__init__.py
steinbock/export/_cli/_cli.py
steinbock/export/_cli/data.py
steinbock/export/_cli/graphs.py
steinbock/measurement/__init__.py
steinbock/measurement/_measurement.py
steinbock/measurement/intensities.py
steinbock/measurement/neighbors.py
steinbock/measurement/regionprops.py
steinbock/measurement/_cli/__init__.py
steinbock/measurement/_cli/_cli.py
steinbock/measurement/_cli/cellprofiler.py
steinbock/measurement/_cli/intensities.py
steinbock/measurement/_cli/neighbors.py
steinbock/measurement/_cli/regionprops.py
steinbock/measurement/cellprofiler/__init__.py
steinbock/measurement/cellprofiler/_cellprofiler.py
steinbock/measurement/cellprofiler/data/__init__.py
steinbock/measurement/cellprofiler/data/cell_measurement.cppipe
steinbock/preprocessing/__init__.py
steinbock/preprocessing/_preprocessing.py
steinbock/preprocessing/external.py
steinbock/preprocessing/imc.py
steinbock/preprocessing/_cli/__init__.py
steinbock/preprocessing/_cli/_cli.py
steinbock/preprocessing/_cli/external.py
steinbock/preprocessing/_cli/imc.py
steinbock/segmentation/__init__.py
steinbock/segmentation/_segmentation.py
steinbock/segmentation/deepcell.py
steinbock/segmentation/_cli/__init__.py
steinbock/segmentation/_cli/_cli.py
steinbock/segmentation/_cli/cellprofiler.py
steinbock/segmentation/_cli/deepcell.py
steinbock/segmentation/cellprofiler/__init__.py
steinbock/segmentation/cellprofiler/_cellprofiler.py
steinbock/segmentation/cellprofiler/data/__init__.py
steinbock/segmentation/cellprofiler/data/cell_segmentation.cppipe
steinbock/utils/__init__.py
steinbock/utils/_utils.py
steinbock/utils/matching.py
steinbock/utils/mosaics.py
steinbock/utils/_cli/__init__.py
steinbock/utils/_cli/_cli.py
steinbock/utils/_cli/matching.py
steinbock/utils/_cli/mosaics.py
tests/test_io.py
tests/classification/test_ilastik_classification.py
tests/export/test_data_export.py
tests/export/test_graphs_export.py
tests/measurement/test_cellprofiler_measurement.py
tests/measurement/test_intensities_measurement.py
tests/measurement/test_neighbors_measurement.py
tests/measurement/test_regionprops_measurement.py
tests/preprocessing/test_imc_preprocessing.py
tests/segmentation/test_cellprofiler_segmentation.py
tests/segmentation/test_deepcell_segmentation.py
tests/utils/test_matching_utils.py
tests/utils/test_mosaics_utils.py