LICENSE
MANIFEST.in
README.rst
setup.py
starseqr.py
ssw/__init__.py
ssw/libssw.py
ssw/sswobj.py
ssw/src/ssw.c
starseqr.egg-info/PKG-INFO
starseqr.egg-info/SOURCES.txt
starseqr.egg-info/dependency_links.txt
starseqr.egg-info/not-zip-safe
starseqr.egg-info/requires.txt
starseqr.egg-info/top_level.txt
starseqr_utils/__init__.py
starseqr_utils/annotate_db.py
starseqr_utils/annotate_sv.py
starseqr_utils/chimerdb3seq2bedpe.py
starseqr_utils/common.py
starseqr_utils/core.py
starseqr_utils/cross_homology.py
starseqr_utils/fusioncancer2bedpe.py
starseqr_utils/gtf_convert.py
starseqr_utils/overhang_diversity.py
starseqr_utils/run_assembly.py
starseqr_utils/run_primer3.py
starseqr_utils/star_funcs.py
starseqr_utils/support_funcs_rna.py
starseqr_utils/sv2bedpe.py
starseqr_utils/resources/ChimerDB3.0_ChimerSeq.bedpe
starseqr_utils/resources/ChimerDB3.0_ChimerSeq.xlsx
starseqr_utils/resources/ChimerDB3.0_ChimerSeq_chimerdbliftedhg19.xlsx
starseqr_utils/resources/FusionCancer.bedpe
starseqr_utils/resources/FusionCancer.xlsx
svtools_star/__init__.py
svtools_star/svtools/__init__.py
svtools_star/svtools/_version.py
svtools_star/svtools/afreq.py
svtools_star/svtools/bedpe.py
svtools_star/svtools/bedpesort.py
svtools_star/svtools/bedpetobed12.py
svtools_star/svtools/bedpetovcf.py
svtools_star/svtools/bedpetovcfconverter.py
svtools_star/svtools/cli.py
svtools_star/svtools/cluster.py
svtools_star/svtools/copynumber.py
svtools_star/svtools/external_cmd.py
svtools_star/svtools/genotype.py
svtools_star/svtools/l_bp.py
svtools_star/svtools/lmerge.py
svtools_star/svtools/lsort.py
svtools_star/svtools/prune.py
svtools_star/svtools/sv_classifier.py
svtools_star/svtools/utils.py
svtools_star/svtools/varlookup.py
svtools_star/svtools/vcfpaste.py
svtools_star/svtools/vcfsort.py
svtools_star/svtools/vcftobedpe.py
svtools_star/svtools/vcftobedpeconverter.py
svtools_star/svtools/vcf/__init__.py
svtools_star/svtools/vcf/file.py
svtools_star/svtools/vcf/genotype.py
svtools_star/svtools/vcf/variant.py
tests/__init__.py
tests/test_anno.py
tests/test_anno_db.py
tests/test_assembly.py
tests/test_crosshom.py
tests/test_diversity.py
tests/test_gtf.py
tests/test_primer.py
tests/test_readsupport.py
tests/test_seq.py
tests/test_ssw.py