MANIFEST.in
README.md
REQUIREMENTS.txt
setup.py
starfish/__init__.py
starfish/__main__.py
starfish/codebook.py
starfish/constants.py
starfish/errors.py
starfish/intensity_table.py
starfish/io.py
starfish/munge.py
starfish/starfish.py
starfish/stats.py
starfish/types.py
starfish.egg-info/PKG-INFO
starfish.egg-info/SOURCES.txt
starfish.egg-info/dependency_links.txt
starfish.egg-info/entry_points.txt
starfish.egg-info/requires.txt
starfish.egg-info/top_level.txt
starfish/image/__init__.py
starfish/image/_stack.py
starfish/pipeline/__init__.py
starfish/pipeline/algorithmbase.py
starfish/pipeline/pipelinecomponent.py
starfish/pipeline/features/__init__.py
starfish/pipeline/features/_validated_table.py
starfish/pipeline/features/spot_attributes.py
starfish/pipeline/features/pixels/__init__.py
starfish/pipeline/features/pixels/_base.py
starfish/pipeline/features/pixels/combine_adjacent_features.py
starfish/pipeline/features/pixels/pixel_spot_detector.py
starfish/pipeline/features/spots/__init__.py
starfish/pipeline/features/spots/decoder/__init__.py
starfish/pipeline/features/spots/decoder/_base.py
starfish/pipeline/features/spots/decoder/iss.py
starfish/pipeline/features/spots/detector/__init__.py
starfish/pipeline/features/spots/detector/_base.py
starfish/pipeline/features/spots/detector/detect.py
starfish/pipeline/features/spots/detector/gaussian.py
starfish/pipeline/features/spots/detector/local_max_peak_finder.py
starfish/pipeline/filter/__init__.py
starfish/pipeline/filter/_base.py
starfish/pipeline/filter/bandpass.py
starfish/pipeline/filter/clip.py
starfish/pipeline/filter/gaussian_high_pass.py
starfish/pipeline/filter/gaussian_low_pass.py
starfish/pipeline/filter/mean_high_pass.py
starfish/pipeline/filter/richardson_lucy_deconvolution.py
starfish/pipeline/filter/util.py
starfish/pipeline/filter/white_tophat.py
starfish/pipeline/registration/__init__.py
starfish/pipeline/registration/_base.py
starfish/pipeline/registration/fourier_shift.py
starfish/pipeline/segmentation/__init__.py
starfish/pipeline/segmentation/_base.py
starfish/pipeline/segmentation/watershed.py
starfish/pipeline/target_assignment/__init__.py
starfish/pipeline/target_assignment/_base.py
starfish/pipeline/target_assignment/point_in_poly.py
starfish/test/__init__.py
starfish/test/dataset_fixtures.py
starfish/test/test_dataframe_to_multiindex.py
starfish/test/test_stack_intensity_table_reshaping.py
starfish/test/test_synthetic_data.py
starfish/test/test_version.py
starfish/test/full_pipelines/__init__.py
starfish/test/full_pipelines/api/__init__.py
starfish/test/full_pipelines/api/test_iss_api.py
starfish/test/full_pipelines/api/test_merfish.py
starfish/test/full_pipelines/cli/__init__.py
starfish/test/full_pipelines/cli/test_iss.py
starfish/test/full_pipelines/cli/test_profiler.py
starfish/test/image/__init__.py
starfish/test/image/test_apply.py
starfish/test/image/test_imagestack.py
starfish/test/image/test_imagestack_metadata.py
starfish/test/image/test_slicedimage_dtype.py
starfish/test/pipeline/__init__.py
starfish/test/pipeline/test_codebook.py
starfish/test/pipeline/test_filter.py
starfish/test/pipeline/test_intensity_table.py
starfish/test/pipeline/test_spot_detection.py
starfish/test/pipeline/test_white_tophat.py
starfish/util/__init__.py
starfish/util/argparse.py
starfish/util/clock.py
starfish/util/synthesize.py