from .semanticbase import create as create_semantic_base

from .annotations import get_uniprot_annotations
from .calculations import calculate_information_content_intrinsic

from .metrics import (
    get_all_commom_ancestors,
    fast_resnik,
    fast_lin,
    fast_jc,
    fast_resn_lin_jc,

)

from .data import (
    create_connection,
    db_select_entry,
    db_select_entry_by_id,
    db_select_transitive,
    get_max_dest,


)

from .ssm import (
    semantic_base,
    ssm_multiple,
    intrinsic,
    mica,
    get_id,
    ssm_resnik,
    ssm_lin,
    ssm_jiang_conrath,
    run_query,
    get_name,
    common_ancestors,
    information_content,
    information_content_intrinsic,
    information_content_extrinsic,
    get_ancestors,
    num_paths,
    shared_ic_dca,
    shared_ic_mica,
    shared_ic,
    light_similarity,
)

name = "ssmpy"
__all__ = [
    "semantic_base",
    "create_semantic_base",
    "get_uniprot_annotations",
    "ssm_multiple",
    "intrinsic",
    "mica",
    "get_id",
    "ssm_resnik",
    "ssm_lin",
    "ssm_jiang_conrath",
    "run_query",
    "get_name",
    "common_ancestors",
    "information_content",
    "information_content_intrinsic",
    "information_content_extrinsic",
    "get_ancestors",
    "num_paths",
    "shared_ic_dca",
    "shared_ic_mica",
    "shared_ic",
    'light_similarity',
    'get_all_commom_ancestors',
    'fast_resnik',
    'fast_lin',
    'fast_jc',
    'fast_resn_lin_jc',
    'create_connection',
    'db_select_entry',
    'db_select_entry_by_id',
    'db_select_transitive',
    'get_max_dest',
    'calculate_information_content_intrinsic',
]
