MANIFEST.in
setup.cfg
setup.py
versioneer.py
sqt/__init__.py
sqt/__main__.py
sqt/_codons.py
sqt/_helpers.c
sqt/_helpers.pyx
sqt/_version.py
sqt/align.py
sqt/ansicolor.py
sqt/args.py
sqt/cigar.py
sqt/colorspace.py
sqt/compat.py
sqt/dna.py
sqt/intervaltree.py
sqt/math.py
sqt/qualtrim.py
sqt/reads.py
sqt/region.py
sqt/utils.py
sqt.egg-info/PKG-INFO
sqt.egg-info/SOURCES.txt
sqt.egg-info/dependency_links.txt
sqt.egg-info/entry_points.txt
sqt.egg-info/requires.txt
sqt.egg-info/top_level.txt
sqt/commands/__init__.py
sqt/commands/addadapt.py
sqt/commands/align.py
sqt/commands/bam2fastq.py
sqt/commands/bameof.py
sqt/commands/bamstats.py
sqt/commands/chars.py
sqt/commands/checkfastqpe.py
sqt/commands/checkvcfref.py
sqt/commands/compare_sequences.py
sqt/commands/coverage.py
sqt/commands/cutvect.py
sqt/commands/fastaextract.py
sqt/commands/fastagrep.py
sqt/commands/fastastats.py
sqt/commands/fastxmod.py
sqt/commands/fixbam64.py
sqt/commands/histogram.py
sqt/commands/mutate.py
sqt/commands/qgramfreq.py
sqt/commands/qualityguess.py
sqt/commands/randomseq.py
sqt/commands/readcov.py
sqt/commands/readlenhisto.py
sqt/commands/rows.py
sqt/commands/samfixn.py
sqt/commands/samsetop.py
sqt/commands/simreads.py
sqt/commands/translate.py
sqt/io/__init__.py
sqt/io/bam.py
sqt/io/fasta.py
sqt/io/gtf.py
sqt/io/sff.py
sqt/io/xopen.py