MANIFEST.in
setup.py
bin/sqt-addadapt
bin/sqt-bam-eof
bin/sqt-bamstats
bin/sqt-chars
bin/sqt-checkfastqpe
bin/sqt-checkvcfref
bin/sqt-compare-sequences
bin/sqt-coverage
bin/sqt-cutvect
bin/sqt-fastaextract
bin/sqt-fastagrep
bin/sqt-fastamutate
bin/sqt-fastastats
bin/sqt-fastqmod
bin/sqt-fastxmod
bin/sqt-fixbam64
bin/sqt-globalalign
bin/sqt-go-enrichment
bin/sqt-histogram
bin/sqt-qgramfreq
bin/sqt-qualityguess
bin/sqt-randomseq
bin/sqt-readlenhisto
bin/sqt-replace-ids
bin/sqt-sam-cscq
bin/sqt-sam-set-op
bin/sqt-samfixn
bin/sqt-saminsertsize
bin/sqt-simreads
bin/sqt-translate
sqt/__init__.py
sqt/_helpers.c
sqt/_helpers.pyx
sqt/_qualtrim.c
sqt/_qualtrim.pyx
sqt/align.py
sqt/ansicolor.py
sqt/args.py
sqt/cigar.py
sqt/colorspace.py
sqt/compat.py
sqt/dna.py
sqt/intervaltree.py
sqt/math.py
sqt/qualtrim.py
sqt/seqio.py
sqt.egg-info/PKG-INFO
sqt.egg-info/SOURCES.txt
sqt.egg-info/dependency_links.txt
sqt.egg-info/top_level.txt
sqt/io/__init__.py
sqt/io/bam.py
sqt/io/fasta.py
sqt/io/gtf.py
sqt/io/sff.py
sqt/io/xopen.py
sqt/scripts/__init__.py
sqt/scripts/addadapt.py
sqt/scripts/bam_eof.py
sqt/scripts/bamstats.py
sqt/scripts/checkfastqpe.py
sqt/scripts/checkvcfref.py
sqt/scripts/compare_sequences.py
sqt/scripts/coverage.py
sqt/scripts/cutvect.py
sqt/scripts/fastaextract.py
sqt/scripts/fastamutate.py
sqt/scripts/fastastats.py
sqt/scripts/fastxmod.py
sqt/scripts/fixbam64.py
sqt/scripts/globalalign.py
sqt/scripts/histogram.py
sqt/scripts/insertsize.py
sqt/scripts/qualityguess.py
sqt/scripts/randomseq.py
sqt/scripts/readlenhisto.py
sqt/scripts/samfixn.py
sqt/scripts/simreads.py
sqt/scripts/translate.py