LICENSE
MANIFEST.in
README.html
README.md
setup.py
README_files/a.html
README_files/example-plot-good.png
README_files/example-plot-poor.png
README_files/frameworks-41c2037bf12f1e46d8f08b88a04a8d8f.css
README_files/frameworks-a3b8a10d4a9e37a78f033ef4a4f525f5.css
README_files/github-a842d1324eb4ab086590be512b951c4c.css
README_files/github-e3bff23d54e12a76d66b61023f1c8796.css
README_files/octicons.css
README_files/progress-bar.png
README_files/site-294181adec18ed639e160b96b45d17ac.css
README_files/site-bdd55e67f0ed3e8974c7c941589e8c6a.css
README_files/status.svg
examples/config_example.conf
examples/test_aln_aa.fasta
examples/test_aln_nt.fasta
examples/test_guide_cladogram.newick
spruceup/__init__.py
spruceup/__main__.py
spruceup/aln_parsing.py
spruceup/aln_writing.py
spruceup/spruceup.py
spruceup.egg-info/PKG-INFO
spruceup.egg-info/SOURCES.txt
spruceup.egg-info/dependency_links.txt
spruceup.egg-info/requires.txt
spruceup.egg-info/top_level.txt
tests/test_simple.py
tests/metamorphic_tests/__init__.py
tests/metamorphic_tests/complement.py
tests/metamorphic_tests/scramble_loci.py
tests/metamorphic_tests/scramble_taxa.py
tests/metamorphic_tests/simulated.fas
tests/metamorphic_tests/simulation.conf
tests/metamorphic_tests/test_metamorphic.py