.gitignore
.pre-commit-config.yaml
CLAUDE.md
LICENSE
MANIFEST.in
Makefile
README.md
pyproject.toml
pytest.ini
requirements.txt
setup.cfg
setup.py
.claude/memory/defaults-principle.md
.claude/memory/doc-update-rule.md
.github/workflows/ci.yml
.github/workflows/release.yml
docs/architecture.md
docs/gpu_integration_plan.md
docs/usage.md
experiments/average_degree_effect/data.json
experiments/epidemic_threshold_validation/data.json
experiments/initial_condition_effect/data.json
experiments/network_size_effect/data.json
experiments/network_type_comparison/data.json
experiments/powerlaw_exponent_effect/data.json
experiments/recovery_distribution_effect/data.json
spkmc/__init__.py
spkmc/_version.py
spkmc.egg-info/PKG-INFO
spkmc.egg-info/SOURCES.txt
spkmc.egg-info/dependency_links.txt
spkmc.egg-info/entry_points.txt
spkmc.egg-info/requires.txt
spkmc.egg-info/top_level.txt
spkmc/analysis/__init__.py
spkmc/analysis/ai_analyzer.py
spkmc/analysis/metrics.py
spkmc/analysis/prompts.py
spkmc/cli/__init__.py
spkmc/cli/__main__.py
spkmc/cli/commands.py
spkmc/cli/display.py
spkmc/cli/formatting.py
spkmc/cli/utils.py
spkmc/cli/validators.py
spkmc/core/__init__.py
spkmc/core/distributions.py
spkmc/core/engine.py
spkmc/core/networks.py
spkmc/core/simulation.py
spkmc/core/transmissibility.py
spkmc/io/__init__.py
spkmc/io/data_manager.py
spkmc/io/experiments.py
spkmc/models/__init__.py
spkmc/models/config.py
spkmc/models/experiment.py
spkmc/models/result.py
spkmc/models/scenario.py
spkmc/utils/__init__.py
spkmc/utils/gpu_utils.py
spkmc/utils/hardware.py
spkmc/utils/numba_utils.py
spkmc/utils/parallel.py
spkmc/visualization/__init__.py
spkmc/visualization/plots.py
tests/__init__.py
tests/conftest.py
tests/test_cli_commands.py
tests/test_cli_validators.py
tests/test_distributions.py
tests/test_export.py
tests/test_fast_edge_generators.py
tests/test_gpu_simulation.py
tests/test_hardware.py
tests/test_integration.py
tests/test_networks.py
tests/test_parallel.py
tests/test_plot_improvements.py
tests/test_results.py
tests/test_simulation.py
tests/test_transmissibility.py