README
setup.py
sphire/__init__.py
sphire.egg-info/PKG-INFO
sphire.egg-info/SOURCES.txt
sphire.egg-info/dependency_links.txt
sphire.egg-info/entry_points.txt
sphire.egg-info/top_level.txt
sphire/bin/__init__.py
sphire/bin/sp_3dvariability.py
sphire/bin/sp_ali2d.py
sphire/bin/sp_ali2d_mref.py
sphire/bin/sp_ali3d.py
sphire/bin/sp_ali_vol.py
sphire/bin/sp_auto.py
sphire/bin/sp_ave_ali.py
sphire/bin/sp_batch.py
sphire/bin/sp_center_projections.py
sphire/bin/sp_chains.py
sphire/bin/sp_cinderella_pred.py
sphire/bin/sp_compare2d.py
sphire/bin/sp_compute_isac_avg.py
sphire/bin/sp_consistency.py
sphire/bin/sp_convert_relionnew_to_relionold.py
sphire/bin/sp_copyfromtif.py
sphire/bin/sp_cpy.py
sphire/bin/sp_cryolo_boxmanager.py
sphire/bin/sp_cryolo_predict.py
sphire/bin/sp_cryolo_train.py
sphire/bin/sp_cter.py
sphire/bin/sp_ctf.py
sphire/bin/sp_ctf_refine.py
sphire/bin/sp_ctf_refine_selection.py
sphire/bin/sp_eval_isac.py
sphire/bin/sp_factcoords.py
sphire/bin/sp_filrecons3d.py
sphire/bin/sp_filterlocal.py
sphire/bin/sp_find_struct.py
sphire/bin/sp_fit_error.py
sphire/bin/sp_genbuf.py
sphire/bin/sp_gui.py
sphire/bin/sp_gui_cter.py
sphire/bin/sp_gui_meridien.py
sphire/bin/sp_gui_unblur.py
sphire/bin/sp_hac_averages.py
sphire/bin/sp_hac_clustering.py
sphire/bin/sp_header.py
sphire/bin/sp_helical_demo.py
sphire/bin/sp_helixboxer.py
sphire/bin/sp_ihrsr.py
sphire/bin/sp_imgstat.py
sphire/bin/sp_isac2.py
sphire/bin/sp_k_means.py
sphire/bin/sp_k_means_groups.py
sphire/bin/sp_k_means_stable.py
sphire/bin/sp_local_ali2d.py
sphire/bin/sp_local_ali3d.py
sphire/bin/sp_local_ali3dm.py
sphire/bin/sp_locres.py
sphire/bin/sp_mask.py
sphire/bin/sp_meridien.py
sphire/bin/sp_meridien_alpha.py
sphire/bin/sp_meridien_alpha2.py
sphire/bin/sp_meridien_beta.py
sphire/bin/sp_meridien_pre_things.py
sphire/bin/sp_meridien_sort.py
sphire/bin/sp_micrograh_selection.py
sphire/bin/sp_montage.py
sphire/bin/sp_mref_ali2d.py
sphire/bin/sp_mref_ali3d.py
sphire/bin/sp_mref_alignment.py
sphire/bin/sp_multi_ali2d.py
sphire/bin/sp_multi_assign.py
sphire/bin/sp_params_2D_to_3D.py
sphire/bin/sp_params_3D_to_2D.py
sphire/bin/sp_pca.py
sphire/bin/sp_pdb2em.py
sphire/bin/sp_pipe.py
sphire/bin/sp_plot_projs_distrib.py
sphire/bin/sp_prepare_2d_forPCA.py
sphire/bin/sp_process.py
sphire/bin/sp_proj_compare.py
sphire/bin/sp_proj_stability.py
sphire/bin/sp_project3d.py
sphire/bin/sp_real.py
sphire/bin/sp_realignment.py
sphire/bin/sp_recons3d_f.py
sphire/bin/sp_recons3d_n.py
sphire/bin/sp_relion2sphire.py
sphire/bin/sp_reproducibility.py
sphire/bin/sp_resample.py
sphire/bin/sp_rewindow.py
sphire/bin/sp_rot_sym.py
sphire/bin/sp_rsort3d.py
sphire/bin/sp_rviper.py
sphire/bin/sp_shiftali.py
sphire/bin/sp_signalsubtract.py
sphire/bin/sp_sort3d.py
sphire/bin/sp_sort3d_depth.py
sphire/bin/sp_sphire2relion.py
sphire/bin/sp_spliteigen.py
sphire/bin/sp_ssnr3d.py
sphire/bin/sp_stability.py
sphire/bin/sp_summovie.py
sphire/bin/sp_sx.py
sphire/bin/sp_transform2d.py
sphire/bin/sp_unblur.py
sphire/bin/sp_unblur_old.py
sphire/bin/sp_var.py
sphire/bin/sp_varimax.py
sphire/bin/sp_viper.py
sphire/bin/sp_window.py
sphire/libpy/__init__.py
sphire/libpy/sp_alignment.py
sphire/libpy/sp_applications.py
sphire/libpy/sp_ctf_refine_io.py
sphire/libpy/sp_ctf_refine_plotting.py
sphire/libpy/sp_development.py
sphire/libpy/sp_filter.py
sphire/libpy/sp_fundamentals.py
sphire/libpy/sp_global_def.py
sphire/libpy/sp_isac.py
sphire/libpy/sp_logger.py
sphire/libpy/sp_morphology.py
sphire/libpy/sp_multi_shc.py
sphire/libpy/sp_pixel_error.py
sphire/libpy/sp_projection.py
sphire/libpy/sp_reconstruction.py
sphire/libpy/sp_sparx.py
sphire/libpy/sp_statistics.py
sphire/libpy/sp_user_functions.py
sphire/libpy/sp_user_functions_meridien.py
sphire/libpy/sp_utilities.py
sphire/libpy/prior_calculation/__init__.py
sphire/libpy/prior_calculation/sp_helix_fundamentals.py
sphire/libpy/prior_calculation/sp_helix_lib.py
sphire/libpy/prior_calculation/sp_helix_prior.py
sphire/libpy/prior_calculation/sp_helix_relion.py
sphire/libpy/prior_calculation/sp_helix_sphire.py
test/test_ft.py
test/test_pw.py