sphae/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
sphae/__main__.py,sha256=SBxhzQbyfYAmiFYAsEBJFwQ2ra-VGwxRcps2NSSufM0,5724
sphae/sphae.CITATION,sha256=-4TLzm27qhjzRtP0xnT51JlEfsDHSKc8jL0j5BWTBNo,645
sphae/sphae.LICENSE,sha256=Bgz4bo18GgQ1K3IiDEXI0DVe7AUBkz9CTcuXW8XhAqg,1075
sphae/sphae.VERSION,sha256=nSvzVtg4-roXWe_T6d4yZHvWjp2oySh4B0s5KHLp8E4,4
sphae/config/config.yaml,sha256=WlUWZC0WHqpCz95HIrLDH1ayj_BPGPpnqYgSPHtToMM,564
sphae/workflow/Snakefile,sha256=UJGsHnMMDyzoaTwbfIxYnqrHVaav18gcm5ozvBB6Jhc,1584
sphae/workflow/install.smk,sha256=ESpeNT9_4hjM8hvpT6IsPywRsDfePe6QrUCInpP9HDk,2720
sphae/workflow/envs/checkv.yaml,sha256=Cbs6uxI165dzRmbT4XajUKSxnUlQigLWk2ckN3-asyE,127
sphae/workflow/envs/flye.yaml,sha256=ZgY6NgzAdg4caJ898TlEyQjj1w1w15MqQE3i6KkdYes,99
sphae/workflow/envs/graph.yaml,sha256=R44rVKdi50dqAOSbBrWGCi6W6CKrDml9oonuYraUNV4,227
sphae/workflow/envs/medaka.yaml,sha256=dKXMd5gkqOH_tgaDdrqdBo5eeyzQf165ZHH2LLGQDv8,98
sphae/workflow/envs/megahit.yaml,sha256=laK-dvqnrFlRPt2_I_wwG5RbUSlpKA13X0VdZIxEMzM,158
sphae/workflow/envs/pharokka.yaml,sha256=W-O0vX6FiU2fOdkSSPMlyAbTBX-YBuEopGXfP0zvEOs,162
sphae/workflow/envs/phold.yaml,sha256=8toYymmM4_73F6Xg6nzOQjcX5ZsWlWbRTXK4bVQjvGg,95
sphae/workflow/envs/phynteny.yaml,sha256=-mcaZGG6bKOC8Lg5g8SnEKLJrRlCH1Q34-BEVQ7aTt0,156
sphae/workflow/envs/samtools.yaml,sha256=Oj-22_1GW1UAOzQaFxxsGobrJXiMaNWwc2Ac-TjaILg,107
sphae/workflow/envs/trimnami.yaml,sha256=Ro0OXpHhAQ9SoXAdIPDxnRtb3SQco60XURL-KDyXmSQ,130
sphae/workflow/envs/viralverify.yaml,sha256=vDmuQkz-_gDVAt5oP5dQt1R02-BZX9dEkP7lsGLVm7I,112
sphae/workflow/rules/1.preflight-database.smk,sha256=j-ORoRePpxwRlvBknuzwBMEikm2SJUBeeGSzNMuUwzE,938
sphae/workflow/rules/1.preflight.smk,sha256=W2ksIqS8jQdotpYe0jFke-sRQPYuOagmex_wVAkPjko,2586
sphae/workflow/rules/10.final-reporting.smk,sha256=zi8HQA1JEgnQeUbDxwYyX-b62T2uTJaYMkjxDUo4dFk,3072
sphae/workflow/rules/2.targets.smk,sha256=Kx2b-Z-wTV7TIxKbA_cEkVdx-R2cZKsKnqFBlSUWpXM,5319
sphae/workflow/rules/3.qc_qa.smk,sha256=7Wx87020YLr37WxLFRZFJyCB5zMtdIQV0UvFRHSExNQ,1602
sphae/workflow/rules/4.assembly.smk,sha256=yWFgy71DhzNvmByIvTMIQxcwqiePSiG8q2pO4OppHso,4757
sphae/workflow/rules/5.checkv.smk,sha256=KiPJSZQZWtzUVq3PVeZycG5JJYNlE1dz8a_ll_8hTNU,2169
sphae/workflow/rules/5.components.smk,sha256=47OC1KK8x_fv5OvYJjWgKpuJlidJfMdTujnvfGOu_EQ,1817
sphae/workflow/rules/5.viralverify.smk,sha256=0_banJYp-KjRctDCKpwcoNJUmShSaDPUlHnqa8uvn5c,2198
sphae/workflow/rules/6.phage_genome.smk,sha256=zV_ULC39VosdFuWiV2l5e4g9ki2w-FvJQg4yaKo1DdM,3065
sphae/workflow/rules/6.stat_join.smk,sha256=gt_LXT7QjcoxVL3HDj_OEazEzd0Xq3ysfQP2aUn85A0,1051
sphae/workflow/rules/7.pharokka.smk,sha256=R-5ONhkrfqzvtWcSzgEgCL1ajR3kfTtKABhTtCQgc1M,5477
sphae/workflow/rules/8.phold.smk,sha256=Q7ZdC7ZDdLJjwq2be41fKDLrzG-AQLDZikLCNpK-58U,2351
sphae/workflow/rules/9.phynteny.smk,sha256=vdieqCCkaIi8ACCWp7ZkGElX10xj5IIZtilBTpJgt0E,2020
sphae/workflow/scripts/components.py,sha256=_fMrD_mMX7dKp4ZWPTN5yTEToJxWzn4mfuO6j1r9nNU,5812
sphae/workflow/scripts/fastg2gfa,sha256=u5fPh6PCze0QnWGWEIPICXPAxfMwerzUEk1qmWyPq3k,32928
sphae/workflow/scripts/joining_stats.py,sha256=eKYBW8-rzX6H6k_U99usAKAV2GBvO4GwgY-DpFed89M,1651
sphae/workflow/scripts/pick_phage_contigs.py,sha256=govOfutxDDwj1kjiGk1qj_OPFddtKpeaiOLRFJMlqjk,1898
sphae/workflow/scripts/rename_genomes.py,sha256=9VFyHKwVO20EIZAJTPhaAbQuYyR_jZGXR8HX9TuVDLk,1758
sphae/workflow/scripts/summary.py,sha256=zY-UGwp5RdMZIWX_EsNYk4c_39RXGrOAgeYw64pvtqQ,9164
sphae/workflow/scripts/graph_utils/build_utils.py,sha256=Uy4ICZ9P5K7uVcd7G5w5VI3SA4OXhezXgWAQ_QgKKow,20327
sphae/workflow/scripts/roblib/__init__.py,sha256=8KGvyuJsVnW44uNhtwGnIKscy7Zytw0fTCqLd_uzbuY,1547
sphae/workflow/scripts/roblib/alignments.py,sha256=4brXvJNGyLPz9Fzaeg4CemPMiGZekd8TeguJ-_iMQMs,1127
sphae/workflow/scripts/roblib/bcolors.py,sha256=tsf0t2aJD7n3AoI_Ic9xJlLilyTyKCH0g1TMB0--82E,571
sphae/workflow/scripts/roblib/blast.py,sha256=wzi-OhN67oL1AP54pqYoTmwhTFZKftHQ9Hd3J67L6yM,1877
sphae/workflow/scripts/roblib/colours.py,sha256=K_Lj4gJ7yeOjutwp9ZFXYGZI8cRxsZANAS3uF6XAa5w,2089
sphae/workflow/scripts/roblib/date_parsing.py,sha256=jOwMbJk1XuqeozcPCfjetVdpS-jyvWCYuXWc7VwWdhc,4646
sphae/workflow/scripts/roblib/dna.py,sha256=RS_p6CtbxJPgLvFYAaRI588sVi0NOCFksY-7HYzBmUU,1390
sphae/workflow/scripts/roblib/dnadist.py,sha256=imj6Dy77Wull-geV4HJvvraI4xb-DhMhnV-xW-s_iCo,1818
sphae/workflow/scripts/roblib/file_chooser.py,sha256=8sMhXLbJxO0gNZK_bs5fyF9lDdHYv2N73y57DO36Nmc,787
sphae/workflow/scripts/roblib/functions.py,sha256=YXbH0samDJZKT1naF_pDsG9sM9YwaH5lTPgBx7GNj8U,2914
sphae/workflow/scripts/roblib/genbank.py,sha256=xQNpsGP9htL8cmRsOk5vxYNDC7OHyUbmWvC6Nk6tQKU,10765
sphae/workflow/scripts/roblib/geography.py,sha256=42oU1uT20K3hK3uKdMk44X3gxK9YHmqD8P4wCWHuS_I,1923
sphae/workflow/scripts/roblib/newick.py,sha256=sMeK2pRLR0LhMAPQQUoK_MAXFfGjfCQTbIP2jVslXS8,6633
sphae/workflow/scripts/roblib/rob_error.py,sha256=T4gZICLa7TN70dsMutFrYIZ_PYo70_YaEbsjryXHQcc,879
sphae/workflow/scripts/roblib/seqio_filter.py,sha256=KcNVQHfsXzKFGvU1W7na6zC08OtLY8PxD-nUvYcKp7s,2355
sphae/workflow/scripts/roblib/sequences.py,sha256=NuGZR0lIXdXIN353f08u-1jhu8hUXtj5lUmJ9Wa1WgQ,10890
sphae/workflow/scripts/roblib/stats.py,sha256=-T8Zn0DMEcEktIh3vHoHlpCOs8cjrQJM7KaFNY4PSBA,2790
sphae/workflow/scripts/roblib/strings.py,sha256=tGHTdu2aAG6mgD-SNUyz-NqlpoVXQhMlYik0xCu_CJ4,193
sphae/workflow/scripts/roblib/translate.py,sha256=1ptsB-m2vsyKfovMeqyp1x0Ju1el6zWtgsr91qcO-3M,4840
sphae-1.4.data/data/README.md,sha256=Fc3yEaaIlDcMbIe5YAdOGeLa_6jskmcCVwn_t3-iDeQ,9939
sphae-1.4.dist-info/LICENSE,sha256=TOwq4A0WVsJg2qzPtrEkkZPae_43ILd_HmaLvNJLeX4,1068
sphae-1.4.dist-info/METADATA,sha256=B6-83rgTZgNTz8vqyM9KWyduU4a8krLqDGsX6aVTb6Q,11050
sphae-1.4.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
sphae-1.4.dist-info/entry_points.txt,sha256=cigaH7TsnMkJeKQcyX447_GmJdtIsTBsuj6vufDv82I,46
sphae-1.4.dist-info/top_level.txt,sha256=9UBV_-0ZfsUERXLbaajxeyKzMjCkhtx3LvSTUuUaNuQ,6
sphae-1.4.dist-info/RECORD,,
