LICENSE.md
README.md
pyproject.toml
spex/__init__.py
spex/events.py
spex/worker.py
spex/chex/__init__.py
spex/chex/chex_test.py
spex/chex/py.typed
spex/chex/_src/__init__.py
spex/chex/_src/asserts.py
spex/chex/_src/asserts_chexify.py
spex/chex/_src/asserts_chexify_test.py
spex/chex/_src/asserts_internal.py
spex/chex/_src/asserts_internal_test.py
spex/chex/_src/asserts_test.py
spex/chex/_src/dataclass.py
spex/chex/_src/dataclass_test.py
spex/chex/_src/dimensions.py
spex/chex/_src/dimensions_test.py
spex/chex/_src/fake.py
spex/chex/_src/fake_set_n_cpu_devices_test.py
spex/chex/_src/fake_test.py
spex/chex/_src/pytypes.py
spex/chex/_src/restrict_backends.py
spex/chex/_src/restrict_backends_test.py
spex/chex/_src/variants.py
spex/chex/_src/variants_test.py
spex/chex/_src/warnings.py
spex/chex/_src/warnings_test.py
spex/core/__init__.py
spex/core/utils.py
spex/core/clustering/__init__.py
spex/core/clustering/phenograph.py
spex/core/segmentation/__init__.py
spex/core/segmentation/background_subtract.py
spex/core/segmentation/cellpose_cellseg.py
spex/core/segmentation/filters.py
spex/core/segmentation/io.py
spex/core/segmentation/postprocessing.py
spex/core/segmentation/stardist.py
spex/core/segmentation/watershed.py
spex/core/spatial_transcriptomics/__init__.py
spex/core/spatial_transcriptomics/analyze_pathways.py
spex/core/spatial_transcriptomics/clq.py
spex/core/spatial_transcriptomics/clustering.py
spex/core/spatial_transcriptomics/differential_expression.py
spex/core/spatial_transcriptomics/load_anndata.py
spex/core/spatial_transcriptomics/niche.py
spex/core/spatial_transcriptomics/preprocessing.py
spex/core/spatial_transcriptomics/reduce_dimensionality.py
spex/resources/__init__.py
spex/resources/progeny.parquet
spex_tools.egg-info/PKG-INFO
spex_tools.egg-info/SOURCES.txt
spex_tools.egg-info/dependency_links.txt
spex_tools.egg-info/requires.txt
spex_tools.egg-info/top_level.txt
tests/test_clustering.py
tests/test_core.py
tests/test_segmentation.py
tests/test_spatial_transcriptomics.py