from .velocity import (
    set_start_cells,
    get_ot_matrix,
    get_ptime,
    get_velocity,
    Lasso,
    auto_get_start_cluster,
    get_velocity_grid,
    auto_estimate_para,
    calc_alpha_by_moransI,
)

from .lap import (
    least_action,
    map_cell_to_LAP,
    plot_least_action_path,
)

from .vectorfield import VectorField

from .Pgene import (
    filter_gene,
    ptime_gene_GAM,
    order_trajectory_genes,
    plot_trajectory_gene_heatmap,
    plot_trajectory_gene,
)

from .start_cluster import (

   assess_start_cluster,
   assess_start_cluster_plot
   )

from .utils import nearest_neighbors

from .gene_regulation import Trainer

__version__ = '0.1.1'
