Metadata-Version: 2.1
Name: spatial-eggplant
Version: 0.1
Summary: Landmark-based transfer of spatial transcriptomics data
Home-page: https://github.com/almaan/eggplant
Author: Alma Andersson
Author-email: almaan@kth.se
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3.7
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy (<=1.20,>1.19)
Requires-Dist: numba
Requires-Dist: pandas (>=1.0.0)
Requires-Dist: anndata (>=0.7.5)
Requires-Dist: matplotlib (>=3.3.3)
Requires-Dist: scanpy (>=1.5.0)
Requires-Dist: torch (>=1.8.1)
Requires-Dist: gpytorch (>=1.4.2)
Requires-Dist: squidpy (>=1.1.0)
Requires-Dist: morphops (>=0.1.12)

# eggplant - effortless generic GP landmark transfer

[![codecov](https://codecov.io/gh/almaan/eggplant/branch/publish/graph/badge.svg?token=NFJWGVK56D)](https://codecov.io/gh/almaan/eggplant)
[![Documentation Status](https://readthedocs.org/projects/spatial-eggplant/badge/?version=latest)](https://spatial-eggplant.readthedocs.io/en/latest/?badge=latest)


eggplant is a tool that transfers information from multiple different spatial
transcriptomics data sets to a single reference representing a common
coordinate framework (CCF).

The package is compatible with `scanpy` and its derivatives as well as with
`anndata`.

We refer to the
[Documentation](https://spatial-eggplant.readthedocs.io/en/latest/eggplant.html#)
for more information about installation and examples of use. You can also visit
the [github](https://github.com/almaan/eggplant) page to find instructions on
how to access example data sets and the associated manuscript.


