from .architype import (
    archetypes,
    archetypes_genes,
    find_spatial_archetypes,
    find_spatially_related_genes,
    get_genes_from_spatial_archetype,
)
from .CCI_effects_modeling import *
from .cci_two_cluster import (
    find_cci_two_group,
    prepare_cci_cellpair_adata,
    prepare_cci_df,
)
from .cell_communication import niches, predict_ligand_activities, predict_target_genes
from .cluster import *
from .cluster.find_clusters import scc, spagcn_pyg
from .cluster_degs import (
    find_all_cluster_degs,
    find_cluster_degs,
    find_spatial_cluster_degs,
    top_n_degs,
)
from .cluster_lasso import *
from .coarse_align import AffineTrans, align_slices_pca, pca_align, procrustes
from .find_neighbors import construct_nn_graph, neighbors
from .glm import glm_degs
from .labels import Label, create_label_class
from .lisa import GM_lag_model, lisa_geo_df, local_moran_i
from .live_wire import LiveWireSegmentation, compute_shortest_path, live_wire
from .spatial_degs import cellbin_morani, moran_i
