LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
src/SpaceTravLR/__init__.py
src/SpaceTravLR/astronomer.py
src/SpaceTravLR/beta.py
src/SpaceTravLR/gene_factory.py
src/SpaceTravLR/oracles.py
src/SpaceTravLR/spaceship.py
src/SpaceTravLR/virtual_tissue.py
src/SpaceTravLR/visionary.py
src/SpaceTravLR.egg-info/PKG-INFO
src/SpaceTravLR.egg-info/SOURCES.txt
src/SpaceTravLR.egg-info/dependency_links.txt
src/SpaceTravLR.egg-info/requires.txt
src/SpaceTravLR.egg-info/top_level.txt
src/SpaceTravLR/models/__init__.py
src/SpaceTravLR/models/adapted_estimators.py
src/SpaceTravLR/models/bayesian_linear.py
src/SpaceTravLR/models/estimators.py
src/SpaceTravLR/models/parallel_estimators.py
src/SpaceTravLR/models/pixel_attention.py
src/SpaceTravLR/models/probabilistic_estimators.py
src/SpaceTravLR/models/spatial_map.py
src/SpaceTravLR/models/vit_blocks.py
src/SpaceTravLR/plotting/__init__.py
src/SpaceTravLR/plotting/beta_maps.py
src/SpaceTravLR/plotting/cartography.py
src/SpaceTravLR/plotting/layout.py
src/SpaceTravLR/plotting/location.py
src/SpaceTravLR/plotting/modplot.py
src/SpaceTravLR/plotting/niche.py
src/SpaceTravLR/plotting/quantify.py
src/SpaceTravLR/plotting/sankey.py
src/SpaceTravLR/plotting/shift.py
src/SpaceTravLR/tools/__init__.py
src/SpaceTravLR/tools/data.py
src/SpaceTravLR/tools/iwanthue.py
src/SpaceTravLR/tools/knn_smooth.py
src/SpaceTravLR/tools/network.py
src/SpaceTravLR/tools/utils.py
src/SpaceTravLR_data/__init__.py
src/celloracle_tmp/__init__.py
src/celloracle_tmp/helpers.py
src/celloracle_tmp/version.py
src/celloracle_tmp/applications/__init__.py
src/celloracle_tmp/applications/development_module.py
src/celloracle_tmp/applications/differentiation_flow.py
src/celloracle_tmp/applications/pseudotime.py
src/celloracle_tmp/applications/scatter_to_grid.py
src/celloracle_tmp/applications/systematic_analysis_helper.py
src/celloracle_tmp/applications/utility.py
src/celloracle_tmp/data/__init__.py
src/celloracle_tmp/data/config.py
src/celloracle_tmp/data/load_data.py
src/celloracle_tmp/data/load_promoter_base_GRN.py
src/celloracle_tmp/data_conversion/__init__.py
src/celloracle_tmp/data_conversion/process_seurat_object.py
src/celloracle_tmp/go_analysis/__init__.py
src/celloracle_tmp/go_analysis/goatools_wrapper.py
src/celloracle_tmp/go_analysis/init__.py
src/celloracle_tmp/motif_analysis/__init__.py
src/celloracle_tmp/motif_analysis/motif_analysis_utility.py
src/celloracle_tmp/motif_analysis/motif_data.py
src/celloracle_tmp/motif_analysis/process_bed_file.py
src/celloracle_tmp/motif_analysis/process_cicero_data.py
src/celloracle_tmp/motif_analysis/reference_genomes.py
src/celloracle_tmp/motif_analysis/tfinfo_core.py
src/celloracle_tmp/motif_analysis/tss_annotation.py
src/celloracle_tmp/network/__init__.py
src/celloracle_tmp/network/net_core.py
src/celloracle_tmp/network/net_util.py
src/celloracle_tmp/network/regression_models.py
src/celloracle_tmp/network_analysis/__init__.py
src/celloracle_tmp/network_analysis/cartography.py
src/celloracle_tmp/network_analysis/gene_analysis.py
src/celloracle_tmp/network_analysis/links_object.py
src/celloracle_tmp/network_analysis/network_analysis_utility.py
src/celloracle_tmp/network_analysis/network_construction.py
src/celloracle_tmp/network_analysis/network_structure_analysis.py
src/celloracle_tmp/network_analysis/use_r_scripts.py
src/celloracle_tmp/oracle_utility/__init__.py
src/celloracle_tmp/oracle_utility/development_analysis.py
src/celloracle_tmp/oracle_utility/interactive_simulation_and_plot.py
src/celloracle_tmp/oracle_utility/make_figure.py
src/celloracle_tmp/oracle_utility/scatter_to_grid.py
src/celloracle_tmp/oracle_utility/utility.py
src/celloracle_tmp/oracle_utility/visualization.py
src/celloracle_tmp/trajectory/__init__.py
src/celloracle_tmp/trajectory/init__.py
src/celloracle_tmp/trajectory/markov_simulation.py
src/celloracle_tmp/trajectory/modified_VelocytoLoom_class.py
src/celloracle_tmp/trajectory/neighbors.py
src/celloracle_tmp/trajectory/oracle_GRN.py
src/celloracle_tmp/trajectory/oracle_core.py
src/celloracle_tmp/trajectory/oracle_utility.py
src/celloracle_tmp/trajectory/sankey.py
src/celloracle_tmp/utility/__init__.py
src/celloracle_tmp/utility/data_download_from_web.py
src/celloracle_tmp/utility/hdf5_processing.py
src/celloracle_tmp/utility/load_hdf5.py
src/celloracle_tmp/utility/make_log.py
src/celloracle_tmp/utility/package_version_checker.py
src/celloracle_tmp/utility/pandas_utility_for_jupyternotebook.py
src/celloracle_tmp/utility/utility.py
src/celloracle_tmp/visualizations/__init__.py
src/celloracle_tmp/visualizations/config.py
src/celloracle_tmp/visualizations/development_module_visualization.py
src/celloracle_tmp/visualizations/oracle_object_visualization.py
tests/test_bayesian_regression.py
tests/test_cnn.py
tests/test_grn.py
tests/test_model.py
tests/test_oracle.py
tests/test_spacetravlr.py
tests/test_spatial_maps.py
tests/test_utils.py