LICENSE
MANIFEST.in
README.md
setup.py
docs/src/documentation/Extending_SoS.ipynb
docs/src/documentation/Notebook_Interface.ipynb
docs/src/documentation/Remote_Execution.ipynb
docs/src/documentation/SoS_Step.ipynb
docs/src/documentation/SoS_Syntax.ipynb
docs/src/documentation/Targets_and_Actions.ipynb
docs/src/documentation/User_Interface.ipynb
docs/src/documentation/.ipynb_checkpoints/Notebook_Interface-checkpoint.ipynb
docs/src/examples/DEG_Annotation.ipynb
docs/src/examples/DEG_Annotation_remote.ipynb
docs/src/examples/LP_Forward.sos
docs/src/examples/LP_Make.sos
docs/src/examples/LP_Mixed.sos
docs/src/examples/LineCount.ipynb
docs/src/examples/Preview_and_Report_Generation.ipynb
docs/src/examples/Remote_Target.ipynb
docs/src/examples/SAS_Example.ipynb
docs/src/examples/Types_of_cells.ipynb
docs/src/examples/update_toc.sos
docs/src/examples/Fusion_sequences/Fusion_sequences.sos
docs/src/homepage/Documentation.ipynb
docs/src/homepage/Features.ipynb
docs/src/homepage/Overview.ipynb
docs/src/homepage/Running_SoS.ipynb
docs/src/homepage/.ipynb_checkpoints/Documentation-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Running_SoS-checkpoint.ipynb
docs/src/media/JupyterNotebook.png
docs/src/media/convert_html.png
docs/src/media/convert_term.png
docs/src/media/example_dag.png
docs/src/media/resource_history.png
docs/src/media/sample_script.jpg
docs/src/media/sample_script.sos
docs/src/media/sos_step.png
docs/src/media/status_local.png
docs/src/media/step_loop.jpg
docs/src/media/step_options.jpg
docs/src/media/task_status.jpg
docs/src/media/task_status.png
docs/src/media/tasks.png
docs/src/media/vim_syntax.png
docs/src/media/workflow.jpg
docs/src/media/workflow.png
docs/src/tutorials/Auxiliary_Steps.ipynb
docs/src/tutorials/Configuration_Files.ipynb
docs/src/tutorials/Execution_of_Workflow.ipynb
docs/src/tutorials/File_Conversion.ipynb
docs/src/tutorials/Generating_Reports.ipynb
docs/src/tutorials/Project_Management.ipynb
docs/src/tutorials/Quick_Start_Guide.ipynb
docs/src/tutorials/Remote_Execution.ipynb
docs/src/tutorials/SoS_Docker_Guide.ipynb
docs/src/tutorials/Using_SoS_with_Jupyter_Notebook.ipynb
docs/src/tutorials/Using_SoS_with_VIM.ipynb
docs/src/tutorials/Workflow_Specification.ipynb
misc/logo-64x64.png
misc/sos-detect.vim
misc/sos.vim
misc/celery/sos_task.py
misc/ipython/ipython_magic.py
misc/ipython/sos_ipython_profile.py
misc/ipython/test_ipython.py
misc/spyder/patch_spyder.py
misc/spyder/spyder_kernel.py
misc/vim-ipython/ipy.vim
misc/vim-ipython/vim_ipython.py
src/sos/__init__.py
src/sos/__main__.py
src/sos/_version.py
src/sos/actions.py
src/sos/converter.py
src/sos/dag.py
src/sos/hosts.py
src/sos/monitor.py
src/sos/pattern.py
src/sos/runtime.py
src/sos/sos_eval.py
src/sos/sos_executor.py
src/sos/sos_script.py
src/sos/sos_step.py
src/sos/sos_syntax.py
src/sos/sos_task.py
src/sos/target.py
src/sos/utils.py
src/sos.egg-info/PKG-INFO
src/sos.egg-info/SOURCES.txt
src/sos.egg-info/dependency_links.txt
src/sos.egg-info/entry_points.txt
src/sos.egg-info/requires.txt
src/sos.egg-info/top_level.txt
src/sos/Bash/actions.py
src/sos/Bash/kernel.py
src/sos/JavaScript/__init__.py
src/sos/JavaScript/kernel.py
src/sos/Matlab/kernel.py
src/sos/Matlab/sos_py_repr.m
src/sos/PBS/__init__.py
src/sos/PBS/sos_task.py
src/sos/Python/actions.py
src/sos/Python/kernel.py
src/sos/Python/target.py
src/sos/R/__init__.py
src/sos/R/actions.py
src/sos/R/kernel.py
src/sos/R/target.py
src/sos/SAS/kernel.py
src/sos/bioinfo/__init__.py
src/sos/bioinfo/preview.py
src/sos/celery/__init__.py
src/sos/docker/__init__.py
src/sos/docker/actions.py
src/sos/docker/client.py
src/sos/jupyter/__init__.py
src/sos/jupyter/completer.py
src/sos/jupyter/converter.py
src/sos/jupyter/inspector.py
src/sos/jupyter/kernel.js
src/sos/jupyter/kernel.py
src/sos/jupyter/preview.py
src/sos/jupyter/sos-full.tpl
src/sos/jupyter/sos-report.tpl
src/sos/jupyter/sos_executor.py
src/sos/jupyter/sos_step.py
src/sos/jupyter/test_utils.py
src/sos/jupyter/visualize.py
src/sos/rq/__init__.py
src/sos/rq/sos_task.py
test/Bash/test_Bash_actions.py
test/Bash/test_Bash_kernel.py
test/JavaScript/test_JavaScript_kernel.py
test/Matlab/test_Matlab_kernel.py
test/Octave/test_Octave_kernel.py
test/PBS/test_pbs_queue.py
test/Python2/test_Python2_actions.py
test/Python2/test_Python2_kernel.py
test/Python3/test_Python3_actions.py
test/Python3/test_Python3_kernel.py
test/Python3/test_Python3_target.py
test/R/test_R_actions.py
test/R/test_R_kernel.py
test/R/test_R_target.py
test/SAS/test_SAS_kernel.py
test/bioinfo/test_preview.py
test/core/test_actions.py
test/core/test_convert.py
test/core/test_dag.py
test/core/test_execute.py
test/core/test_nested.py
test/core/test_pack.py
test/core/test_parser.py
test/core/test_queue.py
test/core/test_remote.py
test/core/test_remove.py
test/core/test_signature.py
test/core/test_target.py
test/core/test_task.py
test/core/test_utils.py
test/docker/test_docker_actions.py
test/jupyter/test_jupyter_convert.py
test/jupyter/test_jupyter_sos.py
test/jupyter/test_jupyter_tasks.py
test/jupyter/test_sos_completer.py
test/jupyter/test_sos_inspector.py
test/jupyter/test_sos_kernel.py
test/jupyter/test_sos_magics.py
test/rq/test_rq_queue.py