LICENSE
MANIFEST.in
README.md
setup.py
docs/src/documentation/Extending_SoS.ipynb
docs/src/documentation/External_task.ipynb
docs/src/documentation/Notebook_Interface.ipynb
docs/src/documentation/SoS_Step.ipynb
docs/src/documentation/SoS_Syntax.ipynb
docs/src/documentation/Targets_and_Actions.ipynb
docs/src/documentation/User_Interface.ipynb
docs/src/documentation/.ipynb_checkpoints/Auxiliary_Steps-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Command_Line_Options-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Extending_SoS-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/External_task-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Function_Reference-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Notebook_Interface-Copy1-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Notebook_Interface-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Reference_Manual-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/SoS_Functions-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/SoS_Step-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/SoS_Syntax-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/String_Interpolation-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Understanding_Targets-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/User_Interface-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Workflow_Specification-checkpoint.ipynb
docs/src/examples/DEG_Annotation.ipynb
docs/src/examples/DEG_Annotation_remote.ipynb
docs/src/examples/LineCount.ipynb
docs/src/examples/Preview_and_Report_Generation.ipynb
docs/src/examples/Remote_Target.ipynb
docs/src/examples/Types_of_cells.ipynb
docs/src/examples/update_toc.sos
docs/src/examples/.ipynb_checkpoints/Preview_and_Report_Generation-checkpoint.ipynb
docs/src/examples/Fusion_sequences/Fusion_sequences.sos
docs/src/homepage/Documentation.ipynb
docs/src/homepage/Features.ipynb
docs/src/homepage/Overview.ipynb
docs/src/homepage/Running_SoS.ipynb
docs/src/homepage/.ipynb_checkpoints/Documentation-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Features-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Jupyter Notebook Users Manual-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Overview-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Running_SoS-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Untitled-checkpoint.ipynb
docs/src/media/JupyterNotebook.png
docs/src/media/convert_html.png
docs/src/media/convert_term.png
docs/src/media/example_dag.png
docs/src/media/resource_history.png
docs/src/media/sample_script.jpg
docs/src/media/sample_script.sos
docs/src/media/sos_step.png
docs/src/media/status_local.png
docs/src/media/step_loop.jpg
docs/src/media/step_options.jpg
docs/src/media/task_status.jpg
docs/src/media/task_status.png
docs/src/media/tasks.png
docs/src/media/vim_syntax.png
docs/src/media/workflow.jpg
docs/src/media/workflow.png
docs/src/tutorials/Auxiliary_Steps.ipynb
docs/src/tutorials/Configuration_Files.ipynb
docs/src/tutorials/Execution_of_Workflow.ipynb
docs/src/tutorials/File_Conversion.ipynb
docs/src/tutorials/Generating_Reports.ipynb
docs/src/tutorials/Project_Management.ipynb
docs/src/tutorials/Quick_Start_Guide.ipynb
docs/src/tutorials/Remote_Execution.ipynb
docs/src/tutorials/SoS_Actions.ipynb
docs/src/tutorials/SoS_Docker_Guide.ipynb
docs/src/tutorials/Using_SoS_Interactively.ipynb
docs/src/tutorials/Using_SoS_with_IPython.ipynb
docs/src/tutorials/Using_SoS_with_Jupyter_Notebook.ipynb
docs/src/tutorials/Using_SoS_with_Spyder.ipynb
docs/src/tutorials/Using_SoS_with_VIM.ipynb
docs/src/tutorials/Workflow_Specification.ipynb
docs/src/tutorials/.ipynb_checkpoints/Execution_of_Workflow-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/File_Conversion-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Generating_Reports-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Project_Management-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Quick_Start_Guide-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Remote_Execution-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Untitled-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Untitled1-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Untitled2-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Using_SoS_Interactively-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Using_SoS_with_Jupyter_Notebook-checkpoint.ipynb
docs/src/tutorials/tmp/a.jpg
misc/logo-64x64.png
misc/sos-detect.vim
misc/sos.vim
misc/vim-ipython/ipy.vim
misc/vim-ipython/vim_ipython.py
src/sos/__init__.py
src/sos/__main__.py
src/sos/_version.py
src/sos/actions.py
src/sos/converter.py
src/sos/dag.py
src/sos/hosts.py
src/sos/monitor.py
src/sos/pattern.py
src/sos/runtime.py
src/sos/sos_eval.py
src/sos/sos_executor.py
src/sos/sos_script.py
src/sos/sos_step.py
src/sos/sos_syntax.py
src/sos/sos_task.py
src/sos/target.py
src/sos/utils.py
src/sos.egg-info/PKG-INFO
src/sos.egg-info/SOURCES.txt
src/sos.egg-info/dependency_links.txt
src/sos.egg-info/entry_points.txt
src/sos.egg-info/requires.txt
src/sos.egg-info/top_level.txt
src/sos/Bash/actions.py
src/sos/Bash/kernel.py
src/sos/JavaScript/__init__.py
src/sos/JavaScript/kernel.py
src/sos/PBS/__init__.py
src/sos/PBS/sos_task.py
src/sos/Python2/actions.py
src/sos/Python2/kernel.py
src/sos/Python3/actions.py
src/sos/Python3/kernel.py
src/sos/Python3/target.py
src/sos/R/__init__.py
src/sos/R/actions.py
src/sos/R/kernel.py
src/sos/R/target.py
src/sos/SAS/kernel.py
src/sos/addons/patch_spyder.py
src/sos/bioinfo/__init__.py
src/sos/bioinfo/preview.py
src/sos/celery/__init__.py
src/sos/celery/sos_task.py
src/sos/docker/__init__.py
src/sos/docker/actions.py
src/sos/docker/client.py
src/sos/jupyter/__init__.py
src/sos/jupyter/completer.py
src/sos/jupyter/converter.py
src/sos/jupyter/inspector.py
src/sos/jupyter/kernel.js
src/sos/jupyter/kernel.py
src/sos/jupyter/preview.py
src/sos/jupyter/sos-full.tpl
src/sos/jupyter/sos-report.tpl
src/sos/jupyter/sos_executor.py
src/sos/jupyter/sos_ipython_profile.py
src/sos/jupyter/sos_magic.py
src/sos/jupyter/sos_step.py
src/sos/jupyter/spyder_kernel.py
src/sos/jupyter/test_utils.py
src/sos/jupyter/visualize.py
src/sos/rq/__init__.py
src/sos/rq/sos_task.py
test/test_actions.py
test/test_convert.py
test/test_dag.py
test/test_execute.py
test/test_nested.py
test/test_pack.py
test/test_parser.py
test/test_queue.py
test/test_remote.py
test/test_remove.py
test/test_signature.py
test/test_target.py
test/test_task.py
test/test_utils.py
test/Bash/test_Bash_actions.py
test/Bash/test_Bash_kernel.py
test/JavaScript/test_JavaScript_kernel.py
test/Python2/test_Python2_actions.py
test/Python2/test_Python2_kernel.py
test/Python3/test_Python3_actions.py
test/Python3/test_Python3_kernel.py
test/Python3/test_Python3_target.py
test/R/test_R_actions.py
test/R/test_R_kernel.py
test/R/test_R_target.py
test/SAS/test_SAS_kernel.py
test/docker/test_docker_actions.py
test/docker/.sos/default_0_0.js
test/docker/.sos/default_0_0.py
test/docker/.sos/default_0_0_099f8276.py
test/docker/.sos/default_0_0_09ca0986.js
test/docker/.sos/default_0_0_0cea1d4d.js
test/docker/.sos/default_0_0_0d4362ee.py
test/docker/.sos/default_0_0_11f2517a.py
test/docker/.sos/default_0_0_144e7733.py
test/docker/.sos/default_0_0_1a4d1734.js
test/docker/.sos/default_0_0_1d5bc4b3.py
test/docker/.sos/default_0_0_1efac6a2.js
test/docker/.sos/default_0_0_20917bab.js
test/docker/.sos/default_0_0_20ebf26c.js
test/docker/.sos/default_0_0_211444fb.js
test/docker/.sos/default_0_0_277ff693.js
test/docker/.sos/default_0_0_2c39fde1.js
test/docker/.sos/default_0_0_33444945.js
test/docker/.sos/default_0_0_37163763.py
test/docker/.sos/default_0_0_3fbcff47.py
test/docker/.sos/default_0_0_439a264a.js
test/docker/.sos/default_0_0_47b1c8ec.js
test/docker/.sos/default_0_0_49f56d6e.js
test/docker/.sos/default_0_0_4b366c39.js
test/docker/.sos/default_0_0_540847a1.js
test/docker/.sos/default_0_0_5629b97d.js
test/docker/.sos/default_0_0_57259532.js
test/docker/.sos/default_0_0_5b17b543.py
test/docker/.sos/default_0_0_5e6aa7d0.py
test/docker/.sos/default_0_0_5ea52fa6.py
test/docker/.sos/default_0_0_6535a713.js
test/docker/.sos/default_0_0_65b89654.py
test/docker/.sos/default_0_0_6eb67574.py
test/docker/.sos/default_0_0_7468ad5c.js
test/docker/.sos/default_0_0_7487a4bf.js
test/docker/.sos/default_0_0_79c2b11d.py
test/docker/.sos/default_0_0_849f4fb6.js
test/docker/.sos/default_0_0_8b507b0d.js
test/docker/.sos/default_0_0_91dad1db.py
test/docker/.sos/default_0_0_982b6954.js
test/docker/.sos/default_0_0_998319d5.js
test/docker/.sos/default_0_0_a315374f.py
test/docker/.sos/default_0_0_a9f33d7a.js
test/docker/.sos/default_0_0_ad42a441.py
test/docker/.sos/default_0_0_c1f6c280.py
test/docker/.sos/default_0_0_c5111102.js
test/docker/.sos/default_0_0_c8310901.py
test/docker/.sos/default_0_0_c9e17b3d.py
test/docker/.sos/default_0_0_ca2bbd68.py
test/docker/.sos/default_0_0_cd9367c0.js
test/docker/.sos/default_0_0_d13d471c.py
test/docker/.sos/default_0_0_d89083d3.py
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test/docker/.sos/default_0_0_db061547.py
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test/docker/.sos/default_0_0_dfae6f75.py
test/docker/.sos/default_0_0_e7638752.js
test/docker/.sos/default_0_0_e9c2797a.py
test/docker/.sos/default_0_0_ea23df93.py
test/docker/.sos/default_0_0_efcb660d.py
test/docker/.sos/default_0_0_f6503d36.js
test/docker/.sos/default_0_0_fa16b411.js
test/docker/.sos/default_0_0_fbe174cb.py
test/docker/.sos/docker_run_1430.py
test/jupyter/test_ipython.py
test/jupyter/test_jupyter_convert.py
test/jupyter/test_jupyter_sos.py
test/jupyter/test_jupyter_tasks.py
test/jupyter/test_sos_completer.py
test/jupyter/test_sos_inspector.py
test/jupyter/test_sos_kernel.py
test/jupyter/test_sos_magics.py
test/rq/test_rq_queue.py