LICENSE
MANIFEST.in
README.md
setup.py
docs/src/documentation/Extending_SoS.ipynb
docs/src/documentation/External_task.ipynb
docs/src/documentation/Notebook_Interface.ipynb
docs/src/documentation/SoS_Step.ipynb
docs/src/documentation/SoS_Syntax.ipynb
docs/src/documentation/Targets_and_Actions.ipynb
docs/src/documentation/User_Interface.ipynb
docs/src/documentation/.ipynb_checkpoints/Auxiliary_Steps-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Command_Line_Options-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Configuration_Files-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/External_task-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Notebook_Interface-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Preprocessor-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Reference_Manual-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/SoS_Actions-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/SoS_Step-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/SoS_Syntax-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/String_Interpolation-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Targets_and_Actions-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Untitled-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/User_Interface-checkpoint.ipynb
docs/src/documentation/.ipynb_checkpoints/Workflow_Specification-checkpoint.ipynb
docs/src/examples/update_toc.sos
docs/src/examples/Fusion_sequences/Fusion_sequences.sos
docs/src/homepage/Documentation.ipynb
docs/src/homepage/Features.ipynb
docs/src/homepage/Overview.ipynb
docs/src/homepage/Running_SoS.ipynb
docs/src/homepage/.ipynb_checkpoints/Documentation-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Running_SoS-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Untitled-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Untitled1-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Untitled2-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Untitled3-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Untitled4-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Untitled5-checkpoint.ipynb
docs/src/homepage/.ipynb_checkpoints/Untitled6-checkpoint.ipynb
docs/src/media/JupyterNotebook.png
docs/src/media/convert_html.png
docs/src/media/convert_term.png
docs/src/media/example_dag.png
docs/src/media/resource_history.png
docs/src/media/sample_script.jpg
docs/src/media/sample_script.sos
docs/src/media/sos_step.png
docs/src/media/status_local.png
docs/src/media/step_loop.jpg
docs/src/media/step_options.jpg
docs/src/media/task_status.jpg
docs/src/media/task_status.png
docs/src/media/tasks.png
docs/src/media/vim_syntax.png
docs/src/media/workflow.jpg
docs/src/media/workflow.png
docs/src/tutorials/Auxiliary_Steps.ipynb
docs/src/tutorials/Configuration_Files.ipynb
docs/src/tutorials/Execution_of_Workflow.ipynb
docs/src/tutorials/File_Conversion.ipynb
docs/src/tutorials/Generating_Reports.ipynb
docs/src/tutorials/Project_Management.ipynb
docs/src/tutorials/Quick_Start_Guide.ipynb
docs/src/tutorials/Remote_Execution.ipynb
docs/src/tutorials/SoS_Actions.ipynb
docs/src/tutorials/SoS_Docker_Guide.ipynb
docs/src/tutorials/Using_SoS_Interactively.ipynb
docs/src/tutorials/Using_SoS_with_IPython.ipynb
docs/src/tutorials/Using_SoS_with_Jupyter_Notebook.ipynb
docs/src/tutorials/Using_SoS_with_Spyder.ipynb
docs/src/tutorials/Using_SoS_with_VIM.ipynb
docs/src/tutorials/Workflow_Specification.ipynb
docs/src/tutorials/.ipynb_checkpoints/Auxiliary_Steps-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Command_Line_Options-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Execution_of_Workflow-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/File_Conversion-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Generating_Reports-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Quick_Start_Guide-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Remote_Execution-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Untitled-checkpoint.ipynb
docs/src/tutorials/.ipynb_checkpoints/Workflow_Specification-checkpoint.ipynb
misc/logo-64x64.png
misc/sos-detect.vim
misc/sos.vim
misc/vim-ipython/ipy.vim
misc/vim-ipython/vim_ipython.py
sos/__init__.py
sos/__main__.py
sos/_version.py
sos/actions.py
sos/converter.py
sos/dag.py
sos/hosts.py
sos/monitor.py
sos/pattern.py
sos/runtime.py
sos/sos_eval.py
sos/sos_executor.py
sos/sos_script.py
sos/sos_step.py
sos/sos_syntax.py
sos/sos_task.py
sos/target.py
sos/utils.py
sos.egg-info/PKG-INFO
sos.egg-info/SOURCES.txt
sos.egg-info/dependency_links.txt
sos.egg-info/entry_points.txt
sos.egg-info/requires.txt
sos.egg-info/top_level.txt
sos/Bash/actions.py
sos/Bash/kernel.py
sos/Bash/test/test_actions.py
sos/Bash/test/test_kernel.py
sos/New_Language_Template/actions.py
sos/New_Language_Template/kernel.py
sos/New_Language_Template/target.py
sos/New_Language_Template/test/test_actions.py
sos/New_Language_Template/test/test_kernel.py
sos/PBS/__init__.py
sos/PBS/sos_task.py
sos/Python2/actions.py
sos/Python2/kernel.py
sos/Python2/test/test_actions.py
sos/Python2/test/test_kernel.py
sos/Python3/actions.py
sos/Python3/kernel.py
sos/Python3/target.py
sos/Python3/test/test_actions.py
sos/Python3/test/test_kernel.py
sos/Python3/test/test_target.py
sos/R/__init__.py
sos/R/actions.py
sos/R/kernel.py
sos/R/target.py
sos/R/test/test_actions.py
sos/R/test/test_kernel.py
sos/R/test/test_target.py
sos/addons/patch_spyder.py
sos/bioinfo/__init__.py
sos/bioinfo/preview.py
sos/celery/__init__.py
sos/celery/sos_task.py
sos/docker/__init__.py
sos/docker/actions.py
sos/docker/client.py
sos/docker/test/test_actions.py
sos/docker/test/.sos/default_0_0_56e9cc58.py
sos/docker/test/.sos/default_0_0_6ef485de.py
sos/docker/test/.sos/default_0_0_8c1ba092.py
sos/docker/test/.sos/default_0_0_bb46e6fa.py
sos/docker/test/.sos/default_0_0_cb5036c9.py
sos/docker/test/.sos/default_0_0_d2d35a09.py
sos/docker/test/.sos/docker_run_39977.py
sos/jupyter/__init__.py
sos/jupyter/completer.py
sos/jupyter/converter.py
sos/jupyter/inspector.py
sos/jupyter/kernel.js
sos/jupyter/kernel.py
sos/jupyter/preview.py
sos/jupyter/sos.tpl
sos/jupyter/sos_executor.py
sos/jupyter/sos_ipython_profile.py
sos/jupyter/sos_magic.py
sos/jupyter/sos_step.py
sos/jupyter/spyder_kernel.py
sos/jupyter/test/__init__.py
sos/jupyter/test/test_action.py
sos/jupyter/test/test_convert.py
sos/jupyter/test/test_ipython.py
sos/jupyter/test/test_kernel.py
sos/jupyter/test/test_tasks.py
sos/jupyter/test/utils.py
sos/rq/__init__.py
sos/rq/sos_task.py
sos/rq/test/test_queue.py
test/test_actions.py
test/test_convert.py
test/test_dag.py
test/test_execute.py
test/test_nested.py
test/test_pack.py
test/test_parser.py
test/test_queue.py
test/test_remote.py
test/test_remove.py
test/test_signature.py
test/test_target.py
test/test_task.py
test/test_utils.py
test/.sos/default_0_0_12668d72.js
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