LICENSE
MANIFEST.in
README.md
pyproject.toml
sonnia/__init__.py
sonnia/classifiers.py
sonnia/compare_repertoires.py
sonnia/evaluate.py
sonnia/generate.py
sonnia/infer.py
sonnia/plotting.py
sonnia/processing.py
sonnia/sonia.py
sonnia/sonia_paired.py
sonnia/sonnia.py
sonnia/sonnia_paired.py
sonnia/utils.py
sonnia.egg-info/PKG-INFO
sonnia.egg-info/SOURCES.txt
sonnia.egg-info/dependency_links.txt
sonnia.egg-info/entry_points.txt
sonnia.egg-info/requires.txt
sonnia.egg-info/top_level.txt
sonnia/default_models/human_B_heavy/J_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy/V_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy/features.tsv
sonnia/default_models/human_B_heavy/log.txt
sonnia/default_models/human_B_heavy/model_marginals.txt
sonnia/default_models/human_B_heavy/model_params.txt
sonnia/default_models/human_B_heavy_kappa/features.tsv
sonnia/default_models/human_B_heavy_kappa/log.txt
sonnia/default_models/human_B_heavy_kappa/heavy_chain/J_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy_kappa/heavy_chain/V_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy_kappa/heavy_chain/model_marginals.txt
sonnia/default_models/human_B_heavy_kappa/heavy_chain/model_params.txt
sonnia/default_models/human_B_heavy_kappa/light_chain/J_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy_kappa/light_chain/V_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy_kappa/light_chain/model_marginals.txt
sonnia/default_models/human_B_heavy_kappa/light_chain/model_params.txt
sonnia/default_models/human_B_heavy_lambda/features.tsv
sonnia/default_models/human_B_heavy_lambda/log.txt
sonnia/default_models/human_B_heavy_lambda/heavy_chain/J_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy_lambda/heavy_chain/V_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy_lambda/heavy_chain/model_marginals.txt
sonnia/default_models/human_B_heavy_lambda/heavy_chain/model_params.txt
sonnia/default_models/human_B_heavy_lambda/light_chain/J_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy_lambda/light_chain/V_gene_CDR3_anchors.csv
sonnia/default_models/human_B_heavy_lambda/light_chain/model_marginals.txt
sonnia/default_models/human_B_heavy_lambda/light_chain/model_params.txt
sonnia/default_models/human_B_kappa/J_gene_CDR3_anchors.csv
sonnia/default_models/human_B_kappa/V_gene_CDR3_anchors.csv
sonnia/default_models/human_B_kappa/features.tsv
sonnia/default_models/human_B_kappa/log.txt
sonnia/default_models/human_B_kappa/model_marginals.txt
sonnia/default_models/human_B_kappa/model_params.txt
sonnia/default_models/human_B_kappa/.ipynb_checkpoints/log-checkpoint.txt
sonnia/default_models/human_B_lambda/J_gene_CDR3_anchors.csv
sonnia/default_models/human_B_lambda/V_gene_CDR3_anchors.csv
sonnia/default_models/human_B_lambda/features.tsv
sonnia/default_models/human_B_lambda/log.txt
sonnia/default_models/human_B_lambda/model_marginals.txt
sonnia/default_models/human_B_lambda/model_params.txt
sonnia/default_models/human_T_alpha/J_gene_CDR3_anchors.csv
sonnia/default_models/human_T_alpha/V_gene_CDR3_anchors.csv
sonnia/default_models/human_T_alpha/features.tsv
sonnia/default_models/human_T_alpha/log.txt
sonnia/default_models/human_T_alpha/model_marginals.txt
sonnia/default_models/human_T_alpha/model_params.txt
sonnia/default_models/human_T_alpha/.ipynb_checkpoints/features-checkpoint.tsv
sonnia/default_models/human_T_beta/J_gene_CDR3_anchors.csv
sonnia/default_models/human_T_beta/V_gene_CDR3_anchors.csv
sonnia/default_models/human_T_beta/features.tsv
sonnia/default_models/human_T_beta/log.txt
sonnia/default_models/human_T_beta/model_marginals.txt
sonnia/default_models/human_T_beta/model_params.txt
sonnia/default_models/human_T_beta/.ipynb_checkpoints/features-checkpoint.tsv
sonnia/default_models/human_T_beta/.ipynb_checkpoints/model_marginals-checkpoint.txt
sonnia/default_models/human_T_beta/.ipynb_checkpoints/model_params-checkpoint.txt
sonnia/default_models/human_T_beta_alpha/features.tsv
sonnia/default_models/human_T_beta_alpha/log.txt
sonnia/default_models/human_T_beta_alpha/heavy_chain/J_gene_CDR3_anchors.csv
sonnia/default_models/human_T_beta_alpha/heavy_chain/V_gene_CDR3_anchors.csv
sonnia/default_models/human_T_beta_alpha/heavy_chain/model_marginals.txt
sonnia/default_models/human_T_beta_alpha/heavy_chain/model_params.txt
sonnia/default_models/human_T_beta_alpha/light_chain/J_gene_CDR3_anchors.csv
sonnia/default_models/human_T_beta_alpha/light_chain/V_gene_CDR3_anchors.csv
sonnia/default_models/human_T_beta_alpha/light_chain/model_marginals.txt
sonnia/default_models/human_T_beta_alpha/light_chain/model_params.txt
sonnia/default_models/mouse_T_alpha/J_gene_CDR3_anchors.csv
sonnia/default_models/mouse_T_alpha/V_gene_CDR3_anchors.csv
sonnia/default_models/mouse_T_alpha/features.tsv
sonnia/default_models/mouse_T_alpha/log.txt
sonnia/default_models/mouse_T_alpha/model_marginals.txt
sonnia/default_models/mouse_T_alpha/model_params.txt
sonnia/default_models/mouse_T_beta/J_gene_CDR3_anchors.csv
sonnia/default_models/mouse_T_beta/V_gene_CDR3_anchors.csv
sonnia/default_models/mouse_T_beta/features.tsv
sonnia/default_models/mouse_T_beta/log.txt
sonnia/default_models/mouse_T_beta/model_marginals.txt
sonnia/default_models/mouse_T_beta/model_params.txt
sonnia/default_models/mouse_T_beta/.ipynb_checkpoints/features-checkpoint.tsv