LICENSE
MANIFEST.in
README.md
setup.py
sonia/__init__.py
sonia/evaluate.py
sonia/evaluate_model.py
sonia/generate.py
sonia/infer.py
sonia/plotting.py
sonia/sequence_generation.py
sonia/sonia.py
sonia/sonia_leftpos_rightpos.py
sonia/sonia_length_pos.py
sonia/sonia_vjl.py
sonia/utils.py
sonia.egg-info/PKG-INFO
sonia.egg-info/SOURCES.txt
sonia.egg-info/dependency_links.txt
sonia.egg-info/entry_points.txt
sonia.egg-info/not-zip-safe
sonia.egg-info/requires.txt
sonia.egg-info/top_level.txt
sonia/default_models/.DS_Store
sonia/default_models/human_B_heavy/J_gene_CDR3_anchors.csv
sonia/default_models/human_B_heavy/V_gene_CDR3_anchors.csv
sonia/default_models/human_B_heavy/features.tsv
sonia/default_models/human_B_heavy/log.txt
sonia/default_models/human_B_heavy/model_marginals.txt
sonia/default_models/human_B_heavy/model_params.txt
sonia/default_models/human_B_kappa/J_gene_CDR3_anchors.csv
sonia/default_models/human_B_kappa/V_gene_CDR3_anchors.csv
sonia/default_models/human_B_kappa/features.tsv
sonia/default_models/human_B_kappa/log.txt
sonia/default_models/human_B_kappa/model_marginals.txt
sonia/default_models/human_B_kappa/model_params.txt
sonia/default_models/human_B_lambda/J_gene_CDR3_anchors.csv
sonia/default_models/human_B_lambda/V_gene_CDR3_anchors.csv
sonia/default_models/human_B_lambda/features.tsv
sonia/default_models/human_B_lambda/log.txt
sonia/default_models/human_B_lambda/model_marginals.txt
sonia/default_models/human_B_lambda/model_params.txt
sonia/default_models/human_T_alpha/J_gene_CDR3_anchors.csv
sonia/default_models/human_T_alpha/V_gene_CDR3_anchors.csv
sonia/default_models/human_T_alpha/features.tsv
sonia/default_models/human_T_alpha/log.txt
sonia/default_models/human_T_alpha/model_marginals.txt
sonia/default_models/human_T_alpha/model_params.txt
sonia/default_models/human_T_beta/J_gene_CDR3_anchors.csv
sonia/default_models/human_T_beta/V_gene_CDR3_anchors.csv
sonia/default_models/human_T_beta/features.tsv
sonia/default_models/human_T_beta/log.txt
sonia/default_models/human_T_beta/model_marginals.txt
sonia/default_models/human_T_beta/model_params.txt
sonia/default_models/mouse_T_beta/J_gene_CDR3_anchors.csv
sonia/default_models/mouse_T_beta/V_gene_CDR3_anchors.csv
sonia/default_models/mouse_T_beta/features.tsv
sonia/default_models/mouse_T_beta/log.txt
sonia/default_models/mouse_T_beta/model_marginals.txt
sonia/default_models/mouse_T_beta/model_params.txt