Metadata-Version: 2.1
Name: softcopy
Version: 0.0.3
Summary: Copies zarr archives from an acquisition frontend to a different disk, using filesystem watching and lockfiles to allow copying during acquisition.
Author-email: Seth Hinz <sethhinz@me.com>
Project-URL: Homepage, https://royerlab.github.io/softcopy/
Project-URL: Repository, https://github.com/royerlab/softcopy
Project-URL: Documentation, https://royerlab.github.io/softcopy/
Keywords: python
Requires-Python: >=3.11
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy ==2.1.1
Requires-Dist: watchdog >=5.0.3
Requires-Dist: psutil >=6.0.0
Requires-Dist: click >=8.1.7
Requires-Dist: pyyaml >=6.0.2
Requires-Dist: tensorstore >=0.1.66

# softcopy

[![Release](https://img.shields.io/github/v/release/royerlab/softcopy)](https://img.shields.io/github/v/release/royerlab/softcopy)
[![Build status](https://img.shields.io/github/actions/workflow/status/royerlab/softcopy/main.yml?branch=main)](https://github.com/royerlab/softcopy/actions/workflows/main.yml?query=branch%3Amain)
[![codecov](https://codecov.io/gh/royerlab/softcopy/branch/main/graph/badge.svg)](https://codecov.io/gh/royerlab/softcopy)
[![Commit activity](https://img.shields.io/github/commit-activity/m/royerlab/softcopy)](https://img.shields.io/github/commit-activity/m/royerlab/softcopy)
[![License](https://img.shields.io/github/license/royerlab/softcopy)](https://img.shields.io/github/license/royerlab/softcopy)

Copies zarr archives from an acquisition frontend to a different disk, using filesystem watching and lockfiles to allow copying during acquisition.

- **Github repository**: <https://github.com/royerlab/softcopy/>
- **Documentation** <https://royerlab.github.io/softcopy/>

## Getting started with your project

### 1. Create a New Repository

First, create a repository on GitHub with the same name as this project, and then run the following commands:

```bash
git init -b main
git add .
git commit -m "init commit"
git remote add origin git@github.com:royerlab/softcopy.git
git push -u origin main
```

### 2. Set Up Your Development Environment

Then, install the environment and the pre-commit hooks with

```bash
make install
```

This will also generate your `uv.lock` file

### 3. Run the pre-commit hooks

Initially, the CI/CD pipeline might be failing due to formatting issues. To resolve those run:

```bash
uv run pre-commit run -a
```

### 4. Commit the changes

Lastly, commit the changes made by the two steps above to your repository.

```bash
git add .
git commit -m 'Fix formatting issues'
git push origin main
```

You are now ready to start development on your project!
The CI/CD pipeline will be triggered when you open a pull request, merge to main, or when you create a new release.

To finalize the set-up for publishing to PyPI, see [here](https://fpgmaas.github.io/cookiecutter-uv/features/publishing/#set-up-for-pypi).
For activating the automatic documentation with MkDocs, see [here](https://fpgmaas.github.io/cookiecutter-uv/features/mkdocs/#enabling-the-documentation-on-github).
To enable the code coverage reports, see [here](https://fpgmaas.github.io/cookiecutter-uv/features/codecov/).

## Releasing a new version

- Create an API Token on [PyPI](https://pypi.org/).
- Add the API Token to your projects secrets with the name `PYPI_TOKEN` by visiting [this page](https://github.com/royerlab/softcopy/settings/secrets/actions/new).
- Create a [new release](https://github.com/royerlab/softcopy/releases/new) on Github.
- Create a new tag in the form `*.*.*`.

For more details, see [here](https://fpgmaas.github.io/cookiecutter-uv/features/cicd/#how-to-trigger-a-release).

---

Repository initiated with [fpgmaas/cookiecutter-uv](https://github.com/fpgmaas/cookiecutter-uv).
