LICENSE.md
README.md
pyproject.toml
setup.cfg
setup.py
socialgene/__init__.py
socialgene/common_parameters.env
socialgene/config.py
socialgene.egg-info/PKG-INFO
socialgene.egg-info/SOURCES.txt
socialgene.egg-info/dependency_links.txt
socialgene.egg-info/entry_points.txt
socialgene.egg-info/requires.txt
socialgene.egg-info/top_level.txt
socialgene/addons/__init__.py
socialgene/addons/antismash/__init__.py
socialgene/addons/antismash/nr.py
socialgene/addons/chebi/__init__.py
socialgene/addons/chebi/nr.py
socialgene/addons/chembl/__init__.py
socialgene/addons/chembl/nr.py
socialgene/addons/chemistry/__init__.py
socialgene/addons/chemistry/cli_similarity.py
socialgene/addons/chemistry/nr.py
socialgene/addons/chemistry/substruct.py
socialgene/addons/classyfire/__init__.py
socialgene/addons/classyfire/cli.py
socialgene/addons/classyfire/nr.py
socialgene/addons/classyfire/parse.py
socialgene/addons/culture_collections/__init__.py
socialgene/addons/culture_collections/nr.py
socialgene/addons/gene_cluster/__init__.py
socialgene/addons/gene_cluster/nr.py
socialgene/addons/gnps_library/__init__.py
socialgene/addons/gnps_library/nr.py
socialgene/addons/gnps_library/parse.py
socialgene/addons/gnps_networking/__init__.py
socialgene/addons/gnps_networking/cli.py
socialgene/addons/gnps_networking/nr.py
socialgene/addons/gnps_networking/parse.py
socialgene/addons/mibig/__init__.py
socialgene/addons/mibig/link_cli.py
socialgene/addons/mibig/nr.py
socialgene/addons/npatlas/__init__.py
socialgene/addons/npatlas/cli.py
socialgene/addons/npatlas/nr.py
socialgene/addons/npatlas/parse.py
socialgene/addons/npclassifier/__init__.py
socialgene/addons/npclassifier/nr.py
socialgene/addons/npmrd/__init__.py
socialgene/addons/npmrd/nr.py
socialgene/addons/publication/__init__.py
socialgene/addons/publication/nr.py
socialgene/base/__init__.py
socialgene/base/chem.py
socialgene/base/compare_protein.py
socialgene/base/locus_metadata.py
socialgene/base/molbio.py
socialgene/base/socialgene.py
socialgene/cli/__init__.py
socialgene/cli/__main__.py
socialgene/cli/external_mods/__init__.py
socialgene/cli/external_mods/gnps.py
socialgene/cli/neo4j/__init__.py
socialgene/cli/neo4j/indices.py
socialgene/cli/neo4j/massage.py
socialgene/cli/nextflow/__init__.py
socialgene/cli/nextflow/clean_hmms.py
socialgene/cli/nextflow/create_neo4j_db.py
socialgene/cli/nextflow/export_neo4j_header_files.py
socialgene/cli/nextflow/export_protein_loci_assembly_tables.py
socialgene/cli/nextflow/parameter_export.py
socialgene/cli/nextflow/parse_ncbi_feature_tables.py
socialgene/cli/nextflow/parse_ncbi_taxonomy.py
socialgene/cli/nextflow/process_domtblout.py
socialgene/cli/nextflow/socialgene_hmm_tsv_parser.py
socialgene/cli/search/__init__.py
socialgene/cli/search/gene_cluster.py
socialgene/cli/search/runalot.py
socialgene/cli/search/sea.py
socialgene/clustermap/__init__.py
socialgene/clustermap/serialize.py
socialgene/compare_gene_clusters/__init__.py
socialgene/compare_gene_clusters/compare_gene_clusters.py
socialgene/compare_proteins/__init__.py
socialgene/compare_proteins/base.py
socialgene/compare_proteins/diamond.py
socialgene/compare_proteins/hmm_scoring.py
socialgene/compare_proteins/hmmer.py
socialgene/compare_proteins/mmseqs.py
socialgene/data/__init__.py
socialgene/data/biosample_attributes
socialgene/dbmodifiers/__init__.py
socialgene/dbmodifiers/massage/__init__.py
socialgene/dbmodifiers/massage/indices.py
socialgene/dbmodifiers/massage/massage.py
socialgene/hashing/__init__.py
socialgene/hashing/hashing.py
socialgene/hmm/__init__.py
socialgene/hmm/hmmer.py
socialgene/hmm/hmminfo.py
socialgene/neo4j/__init__.py
socialgene/neo4j/neo4j.py
socialgene/neo4j/neo4j_element.py
socialgene/neo4j/queries.cypher
socialgene/neo4j/schema/__init__.py
socialgene/neo4j/schema/graph_schema.py
socialgene/neo4j/schema/modules.py
socialgene/neo4j/schema/socialgene_modules.py
socialgene/neo4j/search/__init__.py
socialgene/neo4j/search/basic.py
socialgene/neo4j/utils/__init__.py
socialgene/neo4j/utils/admin_import.py
socialgene/neo4j/utils/ingest_from_neo4j.py
socialgene/nextflow/__init__.py
socialgene/nextflow/nodes.py
socialgene/nextflow/relationships.py
socialgene/parsers/__init__.py
socialgene/parsers/datasets_parse.py
socialgene/parsers/fasta.py
socialgene/parsers/genbank.py
socialgene/parsers/gff.py
socialgene/parsers/hmmer_parser.py
socialgene/parsers/hmmmodel.py
socialgene/parsers/ncbi_feature_table.py
socialgene/parsers/ncbi_taxonomy.py
socialgene/parsers/sequence_parser.py
socialgene/search/__init__.py
socialgene/search/base.py
socialgene/search/hmmer.py
socialgene/utils/__init__.py
socialgene/utils/chunker.py
socialgene/utils/download.py
socialgene/utils/file_handling.py
socialgene/utils/get_ncbi_biosample_attributes.py
socialgene/utils/goterms.py
socialgene/utils/lists_to_markdown.py
socialgene/utils/logging.py
socialgene/utils/ncbi_ftp.py
socialgene/utils/nextflow_test_utils.py
socialgene/utils/np_json_converter.py
socialgene/utils/ping.py
socialgene/utils/prep_ncbi_biosample_data.py
socialgene/utils/protein_sqlite.py
socialgene/utils/run_subprocess.py
socialgene/utils/simple_math.py
socialgene/utils/untargz.py
socialgene/utils/version.py