LICENSE.md
README.md
pyproject.toml
setup.cfg
setup.py
socialgene/__init__.py
socialgene/common_parameters.env
socialgene/config.py
socialgene.egg-info/PKG-INFO
socialgene.egg-info/SOURCES.txt
socialgene.egg-info/dependency_links.txt
socialgene.egg-info/entry_points.txt
socialgene.egg-info/requires.txt
socialgene.egg-info/top_level.txt
socialgene/addons/__init__.py
socialgene/addons/base.py
socialgene/addons/chebi.py
socialgene/addons/chembl.py
socialgene/addons/classyfire.py
socialgene/addons/gnps.py
socialgene/addons/mibig.py
socialgene/addons/npatlas.py
socialgene/addons/npmrd.py
socialgene/addons/publication.py
socialgene/addons/ttd.py
socialgene/base/__init__.py
socialgene/base/compare_protein.py
socialgene/base/molbio.py
socialgene/base/socialgene.py
socialgene/cli/__init__.py
socialgene/cli/__main__.py
socialgene/cli/neo4j/__init__.py
socialgene/cli/neo4j/indices.py
socialgene/cli/neo4j/massage.py
socialgene/cli/nextflow/__init__.py
socialgene/cli/nextflow/clean_hmms.py
socialgene/cli/nextflow/create_neo4j_db.py
socialgene/cli/nextflow/export_neo4j_header_files.py
socialgene/cli/nextflow/export_protein_loci_assembly_tables.py
socialgene/cli/nextflow/parameter_export.py
socialgene/cli/nextflow/parse_ncbi_feature_tables.py
socialgene/cli/nextflow/parse_ncbi_taxonomy.py
socialgene/cli/nextflow/process_domtblout.py
socialgene/cli/nextflow/socialgene_hmm_tsv_parser.py
socialgene/clustermap/__init__.py
socialgene/clustermap/serialize.py
socialgene/compare_proteins/__init__.py
socialgene/compare_proteins/base_class.py
socialgene/compare_proteins/mmseqs_WIP.py
socialgene/compare_proteins/hmm/__init__.py
socialgene/compare_proteins/hmm/hmmer.py
socialgene/compare_proteins/hmm/scoring.py
socialgene/data/__init__.py
socialgene/data/biosample_attributes
socialgene/dbmodifiers/__init__.py
socialgene/dbmodifiers/classyfire/__init__.py
socialgene/dbmodifiers/classyfire/importer.py
socialgene/dbmodifiers/massage/__init__.py
socialgene/dbmodifiers/massage/indices.py
socialgene/dbmodifiers/massage/massage.py
socialgene/dbmodifiers/mibig/__init__.py
socialgene/dbmodifiers/mibig/compound.py
socialgene/dbmodifiers/mibig/mmm.py
socialgene/dbmodifiers/mibig/nrps.py
socialgene/dbmodifiers/mibig/pks.py
socialgene/dbmodifiers/npatlas/__init__.py
socialgene/dbmodifiers/npatlas/import.py
socialgene/hashing/__init__.py
socialgene/hashing/hashing.py
socialgene/hmm/__init__.py
socialgene/hmm/hmmer.py
socialgene/hmm/hmminfo.py
socialgene/mmseqs/__init__.py
socialgene/mmseqs/create_database.py
socialgene/mmseqs/index_database.py
socialgene/mmseqs/search.py
socialgene/mmseqs/subset_database.py
socialgene/neo4j/__init__.py
socialgene/neo4j/admin_import.py
socialgene/neo4j/ingest_from_neo4j.py
socialgene/neo4j/neo4j.py
socialgene/neo4j/queries.cypher
socialgene/neo4j/single_protein_search.py
socialgene/neo4j/schema/__init__.py
socialgene/neo4j/schema/modules.py
socialgene/neo4j/schema/neo4j_element.py
socialgene/neo4j/schema/nodes.py
socialgene/neo4j/schema/relationships.py
socialgene/neo4j/schema/socialgene_modules.py
socialgene/neo4j/search/__init__.py
socialgene/neo4j/search/basic.py
socialgene/parsers/__init__.py
socialgene/parsers/datasets_parse.py
socialgene/parsers/fasta.py
socialgene/parsers/genbank.py
socialgene/parsers/hmmer_parser.py
socialgene/parsers/hmmmodel.py
socialgene/parsers/ncbi_feature_table.py
socialgene/parsers/ncbi_taxonomy.py
socialgene/parsers/sequence_parser.py
socialgene/scoring/__init__.py
socialgene/search/__init__.py
socialgene/search/base.py
socialgene/search/hmmer.py
socialgene/taxonomy/__init__.py
socialgene/utils/__init__.py
socialgene/utils/chunker.py
socialgene/utils/file_handling.py
socialgene/utils/get_ncbi_biosample_attributes.py
socialgene/utils/goterms.py
socialgene/utils/lists_to_markdown.py
socialgene/utils/logging.py
socialgene/utils/ncbi_ftp.py
socialgene/utils/nextflow_test_utils.py
socialgene/utils/np_json_converter.py
socialgene/utils/ping.py
socialgene/utils/prep_ncbi_biosample_data.py
socialgene/utils/protein_sqlite.py
socialgene/utils/run_subprocess.py
socialgene/utils/simple_math.py
socialgene/utils/untargz.py
socialgene/utils/version.py