Metadata-Version: 2.1
Name: snvoter
Version: 0.0
Summary: A top up tool to enhance SNV calling from Nanopore sequencing data.
Home-page: UNKNOWN
Author: Vahid Akbari
Author-email: vakbari@bcgsc.ca
License: UNKNOWN
Project-URL: GitHub, https://github.com/vahidAK/SNVoter
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: Unix
Classifier: Operating System :: POSIX :: Linux
Requires-Python: >=3.7
Description-Content-Type: text/markdown
Requires-Dist: numpy (>=1.17.2)
Requires-Dist: pandas (>=1.0.3)
Requires-Dist: pysam (>=0.15.4)
Requires-Dist: tqdm (>=4.36.1)
Requires-Dist: scikit-learn (==0.21.3)
Requires-Dist: tensorflow (==2.1.0)
Requires-Dist: scipy (==1.4.1)
Requires-Dist: keras (==2.2.4)
Requires-Dist: matplotlib (>=3.3.0)
Requires-Dist: multiprocess (>=0.70.10)

SNVoter
=======

A top up tool to enhance SNV calling from Nanopore sequencing data.

## Installation

Using pypi repository

```
pip install snvoter
```

Using conda

```
TBD
```

From source

```
git clone https://github.com/vahidAK/SNVoter.git
cd SNVoter
./snvoter.py
```

## Creation of a dedicated conda environment

SNVoter uses several fixed versions of its dependencies. Users are encouraged
to use a conda or similar environment to isolate the packages from their
default python instance. An environment file is available in the GitHub
repository.

```
git clone https://github.com/vahidAK/SNVoter.git
conda env create -f SNVoter/env/environment.yaml
conda activate snvoter
```


