Usage

Snptools provides commands for a variety of operations. Here are examples of usage.

SNP data processing:

from snplib.finalreport import FinalReport

Computation of parentage:

from snplib.parentage import Discovery, Verification

Preparation format files:

from snplib.format import (
    Snp, make_fam, make_ped, make_lgen, make_map
)

Stat:

from snplib.statistics import (
   hwe, hwe_test, call_rate, allele_freq, minor_allele_freq
)