Index

_

__convert_s_id() (snplib.finalreport.FinalReport method) __handler_data() (snplib.finalreport.FinalReport method) __handler_header() (snplib.finalreport.FinalReport method) __PATTERN_DATA (snplib.finalreport.FinalReport attribute) __PATTERN_HEADER (snplib.finalreport.FinalReport attribute) __sample_by_allele() (snplib.finalreport.FinalReport method)

__status_define() (snplib.parentage.Discovery method) _add_space() (snplib.format.Snp static method) _ALLELE_CODE (snplib.format.Snp attribute) _check_on_ru_symbols() (snplib.finalreport.FinalReport static method) _F_DTYPE (snplib.format.Snp attribute) _FIELDS (snplib.format.Snp attribute) _format_uga() (snplib.format.Snp static method)

A

allele_freq() (in module snplib.statistics)

C

call_rate() (in module snplib.statistics)

check_on() (snplib.parentage.Verification method)

D

data (snplib.format.Snp property)

Discovery (class in snplib.parentage)

F

FinalReport (class in snplib.finalreport)

H

handle() (snplib.finalreport.FinalReport method) header (snplib.finalreport.FinalReport property)

hwe() (in module snplib.statistics) hwe_test() (in module snplib.statistics)

I

isag_disc() (in module snplib.parentage)

isag_verif() (in module snplib.parentage)

M

make_fam() (in module snplib.format) make_lgen() (in module snplib.format) make_map() (in module snplib.format) make_ped() (in module snplib.format) minor_allele_freq() (in module snplib.statistics)

module snplib.finalreport snplib.format snplib.parentage snplib.statistics

N

num_conflicts (snplib.parentage.Discovery property) (snplib.parentage.Verification property)

P

perc_conflicts (snplib.parentage.Discovery property)

process() (snplib.format.Snp method)

R

read() (snplib.finalreport.FinalReport method)

S

search_parent() (snplib.parentage.Discovery method) Snp (class in snplib.format) snp_data (snplib.finalreport.FinalReport property) snplib.finalreport module snplib.format module

snplib.parentage module snplib.statistics module status (snplib.parentage.Discovery property) (snplib.parentage.Verification property)

T

to_file() (snplib.format.Snp method)

V

Verification (class in snplib.parentage)