.gitignore
.readthedocs.yaml
LICENSE
README.md
__init__.py
iconlib.png
pyproject.toml
requirements.txt
.github/workflows/linux.yml
.github/workflows/macos.yml
.github/workflows/windows.yml
docs/Makefile
docs/conf.py
docs/examples.rst
docs/index.rst
docs/install.rst
docs/intro.rst
docs/logo.png
docs/make.bat
docs/modules.rst
docs/snplib.finalreport.rst
docs/snplib.format.rst
docs/snplib.parentage.rst
docs/snplib.rst
docs/snplib.statistics.rst
docs/usage.rst
docs/_build/doctrees/environment.pickle
docs/_build/doctrees/examples.doctree
docs/_build/doctrees/index.doctree
docs/_build/doctrees/install.doctree
docs/_build/doctrees/intro.doctree
docs/_build/doctrees/modules.doctree
docs/_build/doctrees/snplib.doctree
docs/_build/doctrees/snplib.finalreport.doctree
docs/_build/doctrees/snplib.format.doctree
docs/_build/doctrees/snplib.parentage.doctree
docs/_build/doctrees/snplib.statistics.doctree
docs/_build/doctrees/usage.doctree
docs/_build/html/.buildinfo
docs/_build/html/examples.html
docs/_build/html/genindex.html
docs/_build/html/index.html
docs/_build/html/install.html
docs/_build/html/intro.html
docs/_build/html/modules.html
docs/_build/html/objects.inv
docs/_build/html/py-modindex.html
docs/_build/html/search.html
docs/_build/html/searchindex.js
docs/_build/html/snplib.finalreport.html
docs/_build/html/snplib.format.html
docs/_build/html/snplib.html
docs/_build/html/snplib.parentage.html
docs/_build/html/snplib.statistics.html
docs/_build/html/usage.html
docs/_build/html/_modules/index.html
docs/_build/html/_modules/snplib/finalreport/_finalreport.html
docs/_build/html/_modules/snplib/format/_plink.html
docs/_build/html/_modules/snplib/format/_snp.html
docs/_build/html/_modules/snplib/parentage/_discov.html
docs/_build/html/_modules/snplib/parentage/_isagmark.html
docs/_build/html/_modules/snplib/parentage/_verif.html
docs/_build/html/_modules/snplib/statistics/_callrate.html
docs/_build/html/_modules/snplib/statistics/_freq.html
docs/_build/html/_modules/snplib/statistics/_snphwe.html
docs/_build/html/_sources/examples.rst.txt
docs/_build/html/_sources/index.rst.txt
docs/_build/html/_sources/install.rst.txt
docs/_build/html/_sources/intro.rst.txt
docs/_build/html/_sources/modules.rst.txt
docs/_build/html/_sources/snplib.finalreport.rst.txt
docs/_build/html/_sources/snplib.format.rst.txt
docs/_build/html/_sources/snplib.parentage.rst.txt
docs/_build/html/_sources/snplib.rst.txt
docs/_build/html/_sources/snplib.statistics.rst.txt
docs/_build/html/_sources/usage.rst.txt
docs/_build/html/_static/_sphinx_javascript_frameworks_compat.js
docs/_build/html/_static/basic.css
docs/_build/html/_static/doctools.js
docs/_build/html/_static/documentation_options.js
docs/_build/html/_static/file.png
docs/_build/html/_static/jquery.js
docs/_build/html/_static/language_data.js
docs/_build/html/_static/logo.png
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/_build/html/_static/pygments.css
docs/_build/html/_static/searchtools.js
docs/_build/html/_static/sphinx_highlight.js
docs/_build/html/_static/css/badge_only.css
docs/_build/html/_static/css/theme.css
docs/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff
docs/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff2
docs/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff
docs/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff2
docs/_build/html/_static/css/fonts/fontawesome-webfont.eot
docs/_build/html/_static/css/fonts/fontawesome-webfont.svg
docs/_build/html/_static/css/fonts/fontawesome-webfont.ttf
docs/_build/html/_static/css/fonts/fontawesome-webfont.woff
docs/_build/html/_static/css/fonts/fontawesome-webfont.woff2
docs/_build/html/_static/css/fonts/lato-bold-italic.woff
docs/_build/html/_static/css/fonts/lato-bold-italic.woff2
docs/_build/html/_static/css/fonts/lato-bold.woff
docs/_build/html/_static/css/fonts/lato-bold.woff2
docs/_build/html/_static/css/fonts/lato-normal-italic.woff
docs/_build/html/_static/css/fonts/lato-normal-italic.woff2
docs/_build/html/_static/css/fonts/lato-normal.woff
docs/_build/html/_static/css/fonts/lato-normal.woff2
docs/_build/html/_static/js/badge_only.js
docs/_build/html/_static/js/html5shiv-printshiv.min.js
docs/_build/html/_static/js/html5shiv.min.js
docs/_build/html/_static/js/theme.js
src/snplib/__init__.py
src/snplib.egg-info/PKG-INFO
src/snplib.egg-info/SOURCES.txt
src/snplib.egg-info/dependency_links.txt
src/snplib.egg-info/requires.txt
src/snplib.egg-info/top_level.txt
src/snplib/finalreport/__init__.py
src/snplib/finalreport/_finalreport.py
src/snplib/format/__init__.py
src/snplib/format/__settings.py
src/snplib/format/_plink.py
src/snplib/format/_snp.py
src/snplib/parentage/__init__.py
src/snplib/parentage/_discov.py
src/snplib/parentage/_isagmark.py
src/snplib/parentage/_verif.py
src/snplib/parentage/isag_disc.pl
src/snplib/parentage/isag_verif.pl
src/snplib/statistics/__init__.py
src/snplib/statistics/_callrate.py
src/snplib/statistics/_freq.py
src/snplib/statistics/_snphwe.py
tests/__init__.py
tests/finalreport/__init__.py
tests/finalreport/test_finalreport.py
tests/finalreport/files/fr/file1.txt
tests/finalreport/files/fr/file1.xlsx
tests/finalreport/files/fr/file2.txt
tests/finalreport/files/fr/file2.xlsx
tests/finalreport/files/fr/file3.txt
tests/finalreport/files/fr/file3.xlsx
tests/finalreport/files/fr/file4.txt
tests/finalreport/files/fr/file5.txt
tests/finalreport/files/fr/file5.xlsx
tests/finalreport/files/fr/file6.txt
tests/finalreport/files/fr/file6.xlsx
tests/finalreport/files/fr/file7.txt
tests/finalreport/files/fr/file7.xlsx
tests/format/__init__.py
tests/format/test_plink_fam.py
tests/format/test_plink_lgen.py
tests/format/test_plink_map.py
tests/format/test_plink_ped.py
tests/format/test_snp.py
tests/format/files/fplink/fam/file.pl
tests/format/files/fplink/fam/file2.pl
tests/format/files/fplink/fam/file3.pl
tests/format/files/fplink/fam/file4.pl
tests/format/files/fplink/lgen/file.pl
tests/format/files/fplink/map/file_bovinesnp50.csv
tests/format/files/fplink/ped/file.pl
tests/format/files/fplink/ped/file2.pl
tests/format/files/fplink/ped/file3.pl
tests/format/files/fplink/ped/file4.pl
tests/format/files/fsnp/file1.txt
tests/format/files/fsnp/file2.txt
tests/parentage/__init__.py
tests/parentage/test_discov.py
tests/parentage/test_verif.py
tests/parentage/data/parentage_test_disc.csv
tests/parentage/data/parentage_test_verf.csv
tests/statistics/__init__.py
tests/statistics/test_callrate.py
tests/statistics/test_freq_allele.py
tests/statistics/test_freq_maf.py
tests/statistics/test_hwe_t.py
tests/statistics/test_snphwe.py
tests/statistics/data/cr/file_cra.pl
tests/statistics/data/cr/file_crm.pl
tests/statistics/data/freq/etalon.txt
tests/statistics/data/freq/file.pl