LICENSE
README.md
setup.py
snpio/__init__.py
snpio.egg-info/PKG-INFO
snpio.egg-info/SOURCES.txt
snpio.egg-info/dependency_links.txt
snpio.egg-info/entry_points.txt
snpio.egg-info/requires.txt
snpio.egg-info/top_level.txt
snpio/analysis/__init__.py
snpio/analysis/genotype_encoder.py
snpio/analysis/tree_parser.py
snpio/filtering/__init__.py
snpio/filtering/filtering_helper.py
snpio/filtering/filtering_methods.py
snpio/filtering/nremover2.py
snpio/io/__init__.py
snpio/io/phylip_reader.py
snpio/io/structure_reader.py
snpio/io/vcf_reader.py
snpio/plotting/__init__.py
snpio/plotting/plotting.py
snpio/popgenstats/__init__.py
snpio/popgenstats/pop_gen_statistics.py
snpio/read_input/__init__.py
snpio/read_input/genotype_data.py
snpio/read_input/genotype_data_base.py
snpio/read_input/popmap_file.py
snpio/utils/__init__.py
snpio/utils/benchmarking.py
snpio/utils/custom_exceptions.py
snpio/utils/logging.py
snpio/utils/misc.py
snpio/utils/sequence_tools.py
tests/__init__.py
tests/benchmarking.py
tests/filter_packages.py
tests/get_docstrings.py
tests/get_pkg_resources.py
tests/modulefinder.py
tests/test.py
tests/test_nremover2.py
tests/test_phylip_reader.py
tests/test_run_snpio.py
tests/test_structure_reader.py
tests/test_tree_parser.py
tests/test_vcf_calculate_ref_alt.py
tests/test_vcf_reader.py