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CODE_OF_CONDUCT.md
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README.md
makefile
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tasks.py
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.github/workflows/cruft.yml
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docs/_static/icon.png
docs/paper/paper.md
docs/presentation/SNPTransformer.key
src/projects/pretrain/001_preprocess.py
src/projects/pretrain/002_time_loading_mhc.py
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src/projects/pretrain/examine_dataset.py
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src/snp_transformer/py.typed
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src/snp_transformer/train.py
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src/snp_transformer.egg-info/dependency_links.txt
src/snp_transformer.egg-info/requires.txt
src/snp_transformer.egg-info/top_level.txt
src/snp_transformer/config/__init__.py
src/snp_transformer/config/config_schemas.py
src/snp_transformer/config/utils.py
src/snp_transformer/dataset/dataset.py
src/snp_transformer/dataset/loaders.py
src/snp_transformer/model/embedders.py
src/snp_transformer/model/model_layers.py
src/snp_transformer/model/optimizers.py
src/snp_transformer/model/positional_embeddings.py
src/snp_transformer/model/task_modules/__init__.py
src/snp_transformer/model/task_modules/encoder_for_masked_lm.py
src/snp_transformer/model/task_modules/trainable_modules.py
src/snp_transformer/training/loggers.py
tests/__init__.py
tests/conftest.py
tests/test_data_classes.py
tests/test_dataset.py
tests/test_dataset_loaders.py
tests/test_embedder.py
tests/test_model.py
tests/test_positional_encodings.py
tests/test_train.py
tests/data/data.bed
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