LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
src/sniffcell/__init__.py
src/sniffcell/main.py
src/sniffcell/parse_args.py
src/sniffcell/sv_discovery.py
src/sniffcell.egg-info/PKG-INFO
src/sniffcell.egg-info/SOURCES.txt
src/sniffcell.egg-info/dependency_links.txt
src/sniffcell.egg-info/entry_points.txt
src/sniffcell.egg-info/requires.txt
src/sniffcell.egg-info/top_level.txt
src/sniffcell/anno/__init__.py
src/sniffcell/anno/anno.py
src/sniffcell/anno/breakpoint_exclusion.py
src/sniffcell/anno/filter_bed_based_on_variants.py
src/sniffcell/anno/kmeans.py
src/sniffcell/anno/methyl_matrix.py
src/sniffcell/anno/variant_assignment.py
src/sniffcell/anno/vcf_to_df.py
src/sniffcell/deconv/__init__.py
src/sniffcell/deconv/deconv.py
src/sniffcell/dmsv/__init__.py
src/sniffcell/dmsv/dmsv.py
src/sniffcell/dmsv/statistical_test_around_sv.py
src/sniffcell/dmsv/sv_methylation.py
src/sniffcell/find/__init__.py
src/sniffcell/find/ctdmr.py
src/sniffcell/find/find.py
src/sniffcell/report/__init__.py
src/sniffcell/report/igvreport.py
src/sniffcell/report/report.py
src/sniffcell/viz/__init__.py
src/sniffcell/viz/igvviz.py
src/sniffcell/viz/viz.py
tests/test_deconv.py
tests/test_hierarchy_find_and_anno.py
tests/test_igvreport.py
tests/test_igvviz.py
tests/test_report.py
tests/test_sv_discovery.py
tests/test_variant_assignment.py
tests/test_viz.py