@misc{nek5000,
  title = {{{NEK5000}} Version 19.0},
  year = {2019},
  month = dec,
  url = {https://nek5000.mcs.anl.gov/},
  urldate = {2021-03-17},
  howpublished = {Argonne National Laboratory, Illinois}
}

@article{fluiddyn,
doi = {10.5334/jors.237},
year = {2019},
publisher = {Ubiquity Press,  Ltd.},
volume = {7},
author = {Pierre Augier and Ashwin Vishnu Mohanan and Cyrille Bonamy},
title = {{FluidDyn}: A Python Open-Source Framework for Research and Teaching in Fluid Dynamics
    by Simulations,  Experiments and Data Processing},
journal = {Journal of Open Research Software}
}

@article{fluidsim,
doi = {10.5334/jors.239},
year = {2019},
publisher = {Ubiquity Press,  Ltd.},
volume = {7},
author = {Mohanan, Ashwin Vishnu and Bonamy, Cyrille and Linares, Miguel
    Calpe and Augier, Pierre},
title = {{FluidSim}: {Modular}, {Object}-{Oriented} {Python} {Package} for
    {High}-{Performance} {CFD} {Simulations}},
journal = {Journal of Open Research Software}
}

@software{pymech,
author = {Mohanan, Ashwin Vishnu and Chauvat, Guillaume and Kleine, Vitor Gabriel and Fabbiane, Nicolò and Canton, Jacopo},
doi = {10.5281/zenodo.7358961},
license = {GPL-3.0-or-later},
month = nov,
title = {{Pymech: A Python software suite for Nek5000 and SIMSON}},
url = {https://github.com/eX-Mech/pymech},
year = {2022}
}

@article{snakemake,
author = { Mölder, F and Jablonski, KP and Letcher, B and Hall, MB and Tomkins-Tinch, CH and Sochat, V and Forster, J and Lee, S and Twardziok, SO and Kanitz, A and Wilm, A and Holtgrewe, M and Rahmann, S and Nahnsen, S and Köster, J},
title = {Sustainable data analysis with Snakemake [version 1; peer review: 1 approved, 1 approved with reservations]
},
journal = {F1000Research},
volume = {10},
year = {2021},
number = {33},
doi = {10.12688/f1000research.29032.1}
}

@article{matplotlib,
  Author    = {Hunter, J. D.},
  Title     = {Matplotlib: A 2D graphics environment},
  Journal   = {Computing in Science \& Engineering},
  Volume    = {9},
  Number    = {3},
  Pages     = {90--95},
  abstract  = {Matplotlib is a 2D graphics package used for Python for
  application development, interactive scripting, and publication-quality
  image generation across user interfaces and operating systems.},
  publisher = {IEEE COMPUTER SOC},
  doi       = {10.1109/MCSE.2007.55},
  year      = 2007
}

@article{xarray,
  title     = {xarray: {N-D} labeled arrays and datasets in {Python}},
  author    = {Hoyer, S. and J. Hamman},
  journal   = {Journal of Open Research Software},
  volume    = {5},
  number    = {1},
  year      = {2017},
  publisher = {Ubiquity Press},
  doi       = {10.5334/jors.148},
  url       = {https://doi.org/10.5334/jors.148}
}

@article{nekrs,
  title={NekRS, a GPU-accelerated spectral element Navier--Stokes solver},
  author={Fischer, Paul and Kerkemeier, Stefan and Min, Misun and Lan, Yu-Hsiang and Phillips, Malachi and Rathnayake, Thilina and Merzari, Elia and Tomboulides, Ananias and Karakus, Ali and Chalmers, Noel and others},
  journal={Parallel Computing},
  volume={114},
  pages={102982},
  year={2022},
  publisher = {Elsevier},
  doi       = {10.1016/j.parco.2022.102982}
}

@inproceedings{nek5000_scaling,
  author = {Offermans, Nicolas and Marin, Oana and Schanen, Michel and Gong, Jing and Fischer, Paul and Schlatter, Philipp and Obabko, Aleks and Peplinski, Adam and Hutchinson, Maxwell and Merzari, Elia},
  title = {On the Strong Scaling of the Spectral Element Solver Nek5000 on Petascale Systems},
  year = {2016},
  isbn = {9781450341226},
  publisher = {Association for Computing Machinery},
  address = {New York, NY, USA},
  url = {https://doi.org/10.1145/2938615.2938617},
  doi = {10.1145/2938615.2938617},
  booktitle = {Proceedings of the Exascale Applications and Software Conference 2016},
  articleno = {5},
  numpages = {10},
  keywords = {Computational Fluid Dynamics, Nek5000, Scaling, Benchmarking},
  location = {Stockholm, Sweden},
  series = {EASC '16},
  eprint={1706.02970},
  archivePrefix={arXiv},
  primaryClass={cs.DC}
}

@inproceedings{nek5000_openacc,
  author = {Vincent, Jonathan and Gong, Jing and Karp, Martin and Peplinski,
      Adam and Jansson, Niclas and Podobas, Artur and Jocksch, Andreas and Yao,
      Jie and Hussain, Fazle and Markidis, Stefano and Karlsson, Matts and
          Pleiter, Dirk and Laure, Erwin and Schlatter, Philipp},
  title = {Strong Scaling of OpenACC Enabled Nek5000 on Several GPU Based HPC Systems},
  year = {2022},
  isbn = {9781450384988},
  publisher = {Association for Computing Machinery},
  address = {New York, NY, USA},
  url = {https://doi.org/10.1145/3492805.3492818},
  doi = {10.1145/3492805.3492818},
  booktitle = {International Conference on High Performance Computing in Asia-Pacific Region},
  pages = {94–102},
  numpages = {9},
  keywords = {Scaling, OpenACC, Nek5000, Computational Fluid Dynamics, Benchmarking},
  location = {Virtual Event, Japan},
  series = {HPCAsia2022}
}

@misc{neko,
  title={Neko: A Modern, Portable, and Scalable Framework for High-Fidelity Computational Fluid Dynamics},
  author={Niclas Jansson and Martin Karp and Artur Podobas and Stefano Markidis and Philipp Schlatter},
  year={2021},
  eprint={2107.01243},
  archivePrefix={arXiv},
  primaryClass={cs.MS}
}

@article{openfoam,
  title={A tensorial approach to computational continuum mechanics using object-oriented techniques},
  author={Weller, Henry G and Tabor, Gavin and Jasak, Hrvoje and Fureby, Christer},
  journal={Computers in physics},
  volume={12},
  number={6},
  pages={620--631},
  year={1998},
  publisher={American Institute of Physics},
  doi={10.1063/1.168744}
}

@article{Khoubani2023vertical,
  title={Vertical convection regimes in a rectangular cavity: Prandtl and aspect ratio dependance},
  author={Arman Khoubani and Ashwin Vishnu Mohanan and Pierre Augier and Jan-Bert Flór},
  journal={Submitted to the Journal of Fluid Mechanics},
  year={2023},
  url={https://arxiv.org/abs/2304.12657}
}
